Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01135 ATGGACTGCACCGTCACGGAGCCCACTCCCTCCTGCAATGGCGCCGCACCGCCGCGCCGCAGCTCCCGCCGGAGGTTGGTCCAATCGACGCTCTCCCCCCACAACCCACCGAAACCTCCTGAAAAGAACGACAAACACGACGAGGATTACGCGGTTGCTGAGAATCCCAAGAAGAGGAAAAAGCCTAAGGCTAAAACCACTCCTCGCAAAAAAGCTTCCAAGAATGCCGTTCCGAAGAAAAATGTGGCGGCTAATGGGGTCACGGGATCAACTTCGCAGCAGGTGTTGACTGATTCGGATAAGGTTAATGTACCTGTGTTTGATTTGTGGTTGGAAGCGAAATTGTCGGCTGAGGAAGATTCAAGGATATTTGCAGGACGGCAGATACATCCATATTTTTCATTGTGGAAGGCGGGGAAGAAAGTTCAGGATGTGGCTGTATCGGGAAGTAATTTATTGACAGCAAAGATTGAGGATGAATCGATTGCATGCGGCCCTATTCATGTATTTGAAAATATTCAGAATGATACCTCCTCATCCCTTGACTGGAGAAACTGGACGTTTCTGGAGAATACTACCTCTATGGATTATGATCCAGAAAGTTTAGATTTATCTGTTTTGGAGGGTTCTTTCGAATCCTTAAACTTTGATAAGCTTCATAGTTCTTTGGTTCCATCTATCACTTCAATTTCTCAGAATGCCTTATCTTCAAATAGACTTAGTATACATCCAGAAAATCTGGAAGAAGTATCACCATCAAGTTCAGCTTCTCTAGCTGACCAAACATGTCCTCCGTGTAAAGATGCCAAACTGTACATGGGGGAGGATGAATCTGTTACTCCAACTGAACAAGCTGGCATTTTTGGAAAGTCAGATACTGAACCACTGAGTAGATTTCTTCAAGAAAGTATGAGATCATACTACCGTAGTTGTGTAGATAAAGCGGAGGACAGCTTGTGGACATACAAATACAAGCCAACAAAGGCTGTTGAGGTATGTGGTAATGATGAATCTGTGAACTTCTTGCGTGACTGGCTACATCTTTGGTATGAGAGATGTTATAAAAGCAGGAAGGATACCTCTGAGATGGATAAAAGTGACATGCAAGATGCCGATGATGACGATGAGGATTATAAATGTTCCAATAGTGACTATGATTCAGAAGATATAAATGAGGAGGATTCCCTGCAGAATGTTCTTTTAATTACCGGACCGATTGGGAGTGGCAAGTCTGCTGCAGTCTATGCTTGTGCCCAAGAGCAAGGGTTTGACATTTTAGAGCTCAGTGCATCAGATTGTAGAAATGGGACTGTTGTCAAGCAGTATTTTGGAGATTCTCTTGGTTCACTTAGGTTCAAAAGGTTATCAGAAAACCCTGCTAGTTCACAGAAGATATCTACAAAATTGCCCCCAGCTCCGGCTCTGCTCAATGGTAAAGCTGCTGATGAAGTGAATGATGGTGTGGATGAACTGATAGTCGTATCTGATGATGAGGATCATAGCCCCAGTGGATCATCATCGAAGTTACTTGGCAAAAATAAGGTACTTTCATGTAATAAAGTCCAAACTATAATTCTAGTGGAGGATGTGGACATCCTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACATATTGCTCAGACTGCAAGGGGGCCAATTATACTGACCAGTAATAGTGATAATCCTGGCCTTCCGGATAATTTTGATATGCTCCGTGTTTCATTCGTGTTGCCATCACCAAAGGAGTTGCTTTGCCATTTGTACACTATTTGTCTCACCGAAGGAGTCAACATCCATCCTCTTTTACTGGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAATCCATAATGCATCTTCAGTTCTGGTTTCAAAGGAGAAGATTTCTAAAAGATGAAAAGGCACAAATAGGTTATGGCTCACTTCCATTTGATATTAAGCTTGGCCATCAGATACTACCAAAGATAATGCCCTGGGATTTCCCCTCAGAGTTATCCGAACTAATTGACAACGAAATCTCCAAATCAGCAAATATAATGGAAGAAAGCTCTAGAGGATTAGTTACGGAAGAACTTCTTCACAGGCGAAATGATTTAAATGTGCAGTATATGGAAACTGATTATATTGAGGCCAAGAAGGTGGAGATGATTAATAGAAATGAATCTTTGACAGACTACAGTGAGCTTGAAATTCAATATAATGCTATTCCTGAGTTTTCCAATTCTTCTGGTTCCCCACTTGCATCCTCTCGGCAAAATGGCCGAAGGAAATTTGTAGTTATGCCCTCTGATTCTGAGGATGAGGATTCAAATAGTGGATATCCTGTAGACGCACATGATGAAGCTAATAAGAGACAATCAATGAAAAATAATAATGGATGTCTCAATGAATCAAATGGAAACTACCCCAGCACATCAGTTCGCAAACTTGTTTGTTCTGAATTAGAGCATTTAGAGGAGGAACATTTAAAATATTCAGAAACAGCTGACGATACATGCTTAGATAAAACATTTAAATCATTAGATATATCTTGTGTGCCAGAATCAACGTTTGTTCCTGAGACAGCAATTGAAAATGAAGCAGAGACAATGTCTGGAGCAGTGTCTTCTGGTCCTCTTGTTGGTCCTTGGGAAGTTTCCGTGAATAATGAGTTGAAACCATCGTCGTTCAGCACCCGTAGGCGCTTGACAAAATTGTCAAAGAATCCAGATTTGTTGGTGGATGCTGAAACTTCTGATTATTCTCCTAATGGGATTTTGCATGATGTTCAGAATGAGCATATGGAAACAATTGTTAATGTGATGGATGAGTGCAGTCGTATGGATTTCAAACTAAAGCCATCGTTTTTGCAGTCCAATCCATTAACAGATACAGAAATGATACAAAAGTTATGGAGAGATCTTCGCAATCGTAAAATGGATTCAATACAGCATGCTACCTCAGAACAGCTAGGTGCTTTTCAAGTCGTTAAACTTGCTAGTGGACTGAGCAATCTAATTTCAGAAGCTGATTTATTTCATAATTGTGATATTATGGAATCTTCAACGTTCCCTTCTGGTGAAGCCACATGTAGTTGGTATCATGATCAACTAATGGTGTCCACTGTTGCTGAACATGGGTTTTGCTTTTACGCTAATCGTATAGCAGATGAAGGATCGAAATTGGGTTGTGCAAATTGTGTTGATATTACTTCTGAGATGTTGTCTTCCACCACTGATATCATGGCATTGGGGAAATTATCCGGACAGGATCTCAGGAAAAGCAAAGTTATCTATACTGGAAAGGAATTAGAGTGTAAAAAACCAATAAATGATATGCAGAAGAGTGAAACCAAAACATCTCTGTCCGGTGTCATTCAATCCATTGTTCCTGCAAAACTATCCTTGGCATTAAAAGGTGATGTATTCAATGAATATCTATCTTCATTACGCCATATTTCAAGGTCAGAAGCTGTCCGAATTTCACAAGAAGTTGAAAAGAGAAGAGGAAGGGTACGAGGTGTTCACCATTACTTGAGCAGATGTACCACGTTGTCTCCTGAAGATATATCTTTGGTGTGTGAGGGTGACCTGTACAAAAAGATTTCTTCACAACATACAACATAG 3615 0.408 MDCTVTEPTPSCNGAAPPRRSSRRRLVQSTLSPHNPPKPPEKNDKHDEDYAVAENPKKRKKPKAKTTPRKKASKNAVPKKNVAANGVTGSTSQQVLTDSDKVNVPVFDLWLEAKLSAEEDSRIFAGRQIHPYFSLWKAGKKVQDVAVSGSNLLTAKIEDESIACGPIHVFENIQNDTSSSLDWRNWTFLENTTSMDYDPESLDLSVLEGSFESLNFDKLHSSLVPSITSISQNALSSNRLSIHPENLEEVSPSSSASLADQTCPPCKDAKLYMGEDESVTPTEQAGIFGKSDTEPLSRFLQESMRSYYRSCVDKAEDSLWTYKYKPTKAVEVCGNDESVNFLRDWLHLWYERCYKSRKDTSEMDKSDMQDADDDDEDYKCSNSDYDSEDINEEDSLQNVLLITGPIGSGKSAAVYACAQEQGFDILELSASDCRNGTVVKQYFGDSLGSLRFKRLSENPASSQKISTKLPPAPALLNGKAADEVNDGVDELIVVSDDEDHSPSGSSSKLLGKNKVLSCNKVQTIILVEDVDILFPEDRGCIAAIQHIAQTARGPIILTSNSDNPGLPDNFDMLRVSFVLPSPKELLCHLYTICLTEGVNIHPLLLEKFIHSCDGDIRKSIMHLQFWFQRRRFLKDEKAQIGYGSLPFDIKLGHQILPKIMPWDFPSELSELIDNEISKSANIMEESSRGLVTEELLHRRNDLNVQYMETDYIEAKKVEMINRNESLTDYSELEIQYNAIPEFSNSSGSPLASSRQNGRRKFVVMPSDSEDEDSNSGYPVDAHDEANKRQSMKNNNGCLNESNGNYPSTSVRKLVCSELEHLEEEHLKYSETADDTCLDKTFKSLDISCVPESTFVPETAIENEAETMSGAVSSGPLVGPWEVSVNNELKPSSFSTRRRLTKLSKNPDLLVDAETSDYSPNGILHDVQNEHMETIVNVMDECSRMDFKLKPSFLQSNPLTDTEMIQKLWRDLRNRKMDSIQHATSEQLGAFQVVKLASGLSNLISEADLFHNCDIMESSTFPSGEATCSWYHDQLMVSTVAEHGFCFYANRIADEGSKLGCANCVDITSEMLSSTTDIMALGKLSGQDLRKSKVIYTGKELECKKPINDMQKSETKTSLSGVIQSIVPAKLSLALKGDVFNEYLSSLRHISRSEAVRISQEVEKRRGRVRGVHHYLSRCTTLSPEDISLVCEGDLYKKISSQHTT 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01135 1204 MobiDBLite consensus disorder prediction 1 94 - -
Cca03g01135 1204 MobiDBLite consensus disorder prediction 366 387 - -
Cca03g01135 1204 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 96 1203 - -
Cca03g01135 1204 MobiDBLite consensus disorder prediction 361 387 - -
Cca03g01135 1204 MobiDBLite consensus disorder prediction 764 803 - -
Cca03g01135 1204 MobiDBLite consensus disorder prediction 58 76 - -
Cca03g01135 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 631 IPR027417 -
Cca03g01135 1204 MobiDBLite consensus disorder prediction 775 789 - -
Cca03g01135 1204 CDD AAA 400 457 - -
Cca03g01135 1204 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 96 1203 IPR004582 GO:0006281
Cca03g01135 1204 MobiDBLite consensus disorder prediction 38 57 - -
Cca03g01135 1204 Gene3D - 317 571 IPR027417 -
Cca03g01135 1204 Gene3D - 580 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01135 Cca-Chr3 27461068 27469451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01135 320 625 Core DNA Replication Machinery Family AT5G22010 21.069 1.85e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01135 - - gmx:100784209 1791.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01135 03 27461068 27469451 Cca03g01135 03 27461068 27469451 ECH