Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01125 ATGGGCAACGTCCTTGAATCGTTTGCTTCTGGCTTAGGAAATGCTGTTGGCAAACTATTCAATTCTCCAATTGAGTTTCTTTCTGGAAAGTCTTGCAGCTCAGCATGTGGACCGACATGGGATCTCATGTGCTACATAGAACATTTTTGTGTTGCCAATCTTCTCAAGCTAGCAATGGTATTTATGCTATTGTACATTGTTCTGTTATTCTTATATCTGGTGCACAAATTGGGCATATGTGGATGTCTTTGCCGGTCTTCTTGCAAAATGATTTGGGCATGTTTCTCTTCTTGTTTCCATGTTTGGGAGTATTCTTGCACTTTCTTGTGTGTTAAGCTACACCAGTTGAGGAGAAGAAGAAGAAGATTCAAAAGGGGCATGAATCAAAAGTTCTACTTAAAAAGTGGAGAAGATTACACAGATGAAAGTCTTTCATACCATTATTTTCCAACATCTATAAGACCAAGCAGTTCAAATACCCCAATTGCATTGTTTTGTTCTCAATCCACCAACTTCATTGGAAAACTCCTTTGTCCTTCAATGGAAGGTGAGGAGGGGAAACAGCCTTCCCAAAAAAATCCTTACGTTGAACTCGAGGAGGTTGACTTTGATTATATTCTAGCACTGAGCATGCAAGAACATGAGAAAGAGTTCACAATGCTTACAACCATTGAAAGTGCAAGTGATGAATATGCAAGTGACTCCTCTTCtgataatgatgatgatgatCCTAACTTTTTAGAGAGCCTAGAACTTCAGTATCTTGAAGGTGAAGGAACCAatgatgatgatgatgatgatgatgaAATGGAAATGGAAGAAGATGAGATTGATCCAGACGAATTATCCTATGAAGAGTTGATGGAGTTGGGAGAGTTTGTAGGAGAAGAAACAAGAGGGTTATCAGCAAATGAAATCTCTTTGTGCTTGCACCCGTACACTTGTCAATGTGTTGAAAGCAAAAATGGCGTCGATCGTTGTGTGATTTGTCAAGTTGAATATGAAGAAGGTGAACCATTGGTGGCACTTCAATGTGAACACCCTTATCATGCAGATTGCATAAGCAAGTGGCTCCAGATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGTTTCAACTCCCAACATGGTTTCGAACCCATAG 1143 0.3832 MGNVLESFASGLGNAVGKLFNSPIEFLSGKSCSSACGPTWDLMCYIEHFCVANLLKLAMVFMLLYIVLLFLYLVHKLGICGCLCRSSCKMIWACFSSCFHVWEYSCTFLCVKLHQLRRRRRRFKRGMNQKFYLKSGEDYTDESLSYHYFPTSIRPSSSNTPIALFCSQSTNFIGKLLCPSMEGEEGKQPSQKNPYVELEEVDFDYILALSMQEHEKEFTMLTTIESASDEYASDSSSDNDDDDPNFLESLELQYLEGEGTNDDDDDDDEMEMEEDEIDPDELSYEELMELGEFVGEETRGLSANEISLCLHPYTCQCVESKNGVDRCVICQVEYEEGEPLVALQCEHPYHADCISKWLQIKKVCPICSNEVSTPNMVSNP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01125 380 MobiDBLite consensus disorder prediction 254 278 - -
Cca03g01125 380 SUPERFAMILY RING/U-box 326 374 - -
Cca03g01125 380 MobiDBLite consensus disorder prediction 257 278 - -
Cca03g01125 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 376 IPR013083 -
Cca03g01125 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 181 376 IPR045191 GO:0061630
Cca03g01125 380 SMART ring_2 327 367 IPR001841 -
Cca03g01125 380 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Cca03g01125 380 Pfam Ring finger domain 326 367 IPR001841 -
Cca03g01125 380 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 181 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01125 Cca-Chr3 27266904 27269122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01125 260 371 C3H Transcription Factor Family AT3G63530 49.123 6.50e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01125 K19045 - gmx:100526881 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01125 03 27266904 27269122 Cca05g00936 05 25059038 25059669 PCT