Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01124 ATGGCATCAGAGCTTCAGCTTCCCCCTGGATTCAGATTCCATCCGACGGACGAGGAGCTGGTGAAGGACTATCTCTGCCGCAAATGCACGTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTACCAGGATTGGCTTCTTACGGAGAGAAGGAGTGGTACTTCTTCTCACCCCGGGACCGGAAGTACCCGAACGGTTCCAGGCCCAACCGGGCCGCTGGAACCGGGTACTGGAAGGCAACCGGGGCGGATAAGCCCATTGGTCAGCCCAAACCGGTTGGGATCAAGAAAGCCTTGGTGTTTTACGCAGGGAAAGCCCCGAAAGGAGACAAAACCAATTGGATCATGCACGAGTATCGTCTGGCCGATGTGGATCGCTCCGTTCGCCGAAAGAACAGTTTAAGGTTGGATGATTGGGTGCTATGCCGAATTTACAACAAGAAGGGGACGATCGAAAAACAAGAAGCAAAGCGCGAGGCGGTTGGCGTTAGGCAGAAAATGGAATCGTCGGAGATGGAAGAGAAGAAGCCGGTGATTGTGAGCGGCGGAGGGCGTGTAGCGGCGATGACGGACTACATGTACTTCGACCCGTCGGATTCAGTCCCGAAGCTGCACACGGAGTCGAGCTGTTCGGAGCAGGTGGTGTCGCCGGAATTCGCGAGCGAGGTGCAGAGCGAGCCCAAGTGGGTGGAGTTTGATTATAATTACGTGGATGGGCTGGGGGCCCAATTCGAGAGCAGTAATAATGAAATGTCGGATATGTTCTGGTACTGGGCCAAGCCCTAG 816 0.5539 MASELQLPPGFRFHPTDEELVKDYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSVRRKNSLRLDDWVLCRIYNKKGTIEKQEAKREAVGVRQKMESSEMEEKKPVIVSGGGRVAAMTDYMYFDPSDSVPKLHTESSCSEQVVSPEFASEVQSEPKWVEFDYNYVDGLGAQFESSNNEMSDMFWYWAKP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01124 271 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Cca03g01124 271 PANTHER NAC TRANSCRIPTION FACTOR 56 2 248 - -
Cca03g01124 271 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Cca03g01124 271 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 2 248 - -
Cca03g01124 271 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Cca03g01124 271 Coils Coil 163 183 - -
Cca03g01124 271 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01124 Cca-Chr3 27253581 27255677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01124 1 271 NAC Transcription Factor Family AT1G01720 66.781 4.08e-131 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g01124 NAM 7.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01124 - - gmx:732553 445.662