Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01123 ATGGCGGAGATGACCTATCCCATGGACATCGACAGCGACGACAAGGGCAAAAGTGTcgtcgtcgccgccaaccctccccccgccgccgccgccAAGGCCATTCCCTGGGTCGAGAAATACCGCCCTCAGTCCCTCGACGACGTCGCCGCCCACCGTGACATTGTCGATACAATTGATAGGCTGACTACCGAGAACAGGTTGCCGCATCTTCTACTGTATGGCCCTCCTGGAACTGGCAAAACATCAACGATTCTCGCTGTGGCGCGCAAACTGTATGGTTCACAGTTCCACAATATGATTTTGGAGCTCAATGCGTCAGATGATAGAGGAATTGATGTCGTGCGACAACAGATTCAAGAGTTCGCTAGCACTCAGAGCTTGTCATTTGGTGTTAAGTCCTCTGTAAAATTGGTATTGTTAGATGAAGCGGATGCCATGACGAAGGAAGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACTAGGTTTGCACTTATCTGTAATCATGTGAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGGTTCCGGTTTGCCCCTCTTGACGCTGTCCATGTCACTGAAAGACTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTCAAGAGAGTGGCTTAGCAGCTCTTGTTCGATTGAGCAATGGTGACATGAGAAAGGCTTTGAATATTCTTCAGTCAACACATATGGCTTCTGAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACTGGAAACCCATTGCCCAAAGACATCGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGCTTTCAAAGAATAAATGAAATGAAGACAAGGAAAGGGTTGGCCGTAATTGATATTGTCAGGGAAGTAACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAGTTGATGAATGATTTAGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTTATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTTGCAGCTGCTACTTAA 1074 0.4236 MAEMTYPMDIDSDDKGKSVVVAANPPPAAAAKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQFHNMILELNASDDRGIDVVRQQIQEFASTQSLSFGVKSSVKLVLLDEADAMTKEAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVQESGLAALVRLSNGDMRKALNILQSTHMASEQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFQRINEMKTRKGLAVIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01123 357 SUPERFAMILY post-AAA+ oligomerization domain-like 258 348 IPR008921 GO:0003677|GO:0006260
Cca03g01123 357 Pfam ATPase family associated with various cellular activities (AAA) 70 190 IPR003959 GO:0005524|GO:0016887
Cca03g01123 357 Gene3D - 28 192 IPR027417 -
Cca03g01123 357 Gene3D - 196 257 - -
Cca03g01123 357 SMART AAA_5 66 196 IPR003593 -
Cca03g01123 357 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 27 353 - -
Cca03g01123 357 PANTHER REPLICATION FACTOR C SUBUNIT 5 27 353 - -
Cca03g01123 357 CDD AAA 54 192 - -
Cca03g01123 357 Pfam Replication factor C C-terminal domain 258 344 IPR013748 -
Cca03g01123 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 251 IPR027417 -
Cca03g01123 357 Gene3D - 258 355 - -
Cca03g01123 357 CDD HLD_clamp_RFC 193 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01123 Cca-Chr3 27236094 27243434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01123 1 356 Core DNA Replication Machinery Family AT1G77470 77.419 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01123 K10756 - gmx:100782652 631.713