Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01115 ATGGAGTTTGTGGATACCAGAAAACTACAGTTCCAGCCACAACTGCAACCGCAGCAGCACCAACATTTTCATGTGCTGGCAGTGGACGACAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTCAGAGGTTCTTCATGCAAAGTTACCTGTGTGGACTCTGGAGACAAGGCTTTGAAATATCTTGGCCTAGTTGATGAACTTGATGATACTACTTCCTCAACCTCTTTAGAATCATCATCTTCTTCTCCTCCACCTCAACCTCTACAGCAAGAGGGAATCAAAGTGAATTTGATCATGACAGACTATTGCATGCCAGGGATGAGTGGCTATGATTTGCTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTCCCAGTCGTGATCATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTAGAAGAAGGAGCAGAGGAGTTTCTATTGAAGCCTCTTCAGTTATCGGATTTGGATAAGCTTCAGCCGTACTTTCTGAAATCCCTTGACAATTCTTGTGAAAAGGAATCTGCAAACAGTTCCATAGATTCCGAGAATGATGACAATGTCGTCATCATCAACAACAATAACAATAATAGTATTAGCAAAAGGAAGGTCATGTCTCCTGAGCCTCATCACGAGAGATCAAGACCAAAAATGAAAGAGTTGGCGGTGGTGTAA 687 0.4279 MEFVDTRKLQFQPQLQPQQHQHFHVLAVDDSVIDRKLLERLLRGSSCKVTCVDSGDKALKYLGLVDELDDTTSSTSLESSSSSPPPQPLQQEGIKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEEGAEEFLLKPLQLSDLDKLQPYFLKSLDNSCEKESANSSIDSENDDNVVIINNNNNNSISKRKVMSPEPHHERSRPKMKELAVV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01115 228 Pfam Response regulator receiver domain 95 161 IPR001789 GO:0000160
Cca03g01115 228 ProSiteProfiles Response regulatory domain profile. 24 168 IPR001789 GO:0000160
Cca03g01115 228 SMART REC_2 23 164 IPR001789 GO:0000160
Cca03g01115 228 CDD REC_typeA_ARR 25 163 - -
Cca03g01115 228 MobiDBLite consensus disorder prediction 208 228 - -
Cca03g01115 228 Gene3D - 24 219 - -
Cca03g01115 228 MobiDBLite consensus disorder prediction 202 228 - -
Cca03g01115 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 227 IPR045279 GO:0009736
Cca03g01115 228 SUPERFAMILY CheY-like 22 168 IPR011006 -
Cca03g01115 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 12 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01115 Cca-Chr3 27004384 27008303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01115 22 170 Response Regulator Gene Family AT3G57040 61.333 5.46e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g01115 Response_reg 1.8e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01115 K14492 - gmx:100786187 345.895