Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01111 ATGTCCAGCCAGAACCGCCGTTCCTCGTTTTCCTCCTCAACGACGTCGTCTTTGGCCAAACGCCACGCCGCAACCGCTTCCTCCGAGAACAAGGCTCTGGCCAAGAAGCGACCACCGCTCACTAACCTCACCAACACCGTCGCTCACCGCAACTCATCTTCTTCGGTTCCTTGCGCAGCTAAAGTTGCGAAGACCAAGAAAGAGGTTATTCCGGCGTGCTCAGGCAACAAAAGACCTACATTGGCCAATGTTAAACCTTCGAATGCTGTTGTTTTCCCTAAGGCTAGTTCTCTCCCTGAAAGGAATGTAGCTGCTGCTGCTGCACCCCCTCCTCCTCCTCCGTCAGTTTCCGCCACCGTCGTTGTTCCTGCTCCGAGCACTGTGGTCGATGTTTCACCGAGTAAATCAGATGGCATGTCGGTTTCTATGGACGAGTCAATGTCTTCGTGTGACTCTTTCAAGAGTCCTGACATTGAATATGTGGACAACAGCGATGTTGCAGCGGTGGATTCAATTGAGAGGAAGACATTCAGCATTCTCAACATCTCTGATTCGGCAGAACCAGCAGGTAACATTTGTAGTAGGGACATACTTGTTGAGTTGGAAAAGGGGGACAAGTTTGTCAATGTTGATAACAATTACGCGGATCCGCAGCTTTGTGCAACCTTTGCGTGTGATATCTACAAGCACCTTCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGACTTCATGGAGAAGGTTCAGAAGGACATAAACCCCAGCATGCGTGCTATATTGATTGATTGGCTTGTGGAGGTGGCTGAAGAGTATAGACTTGTACCTGATACGTTGTATTTGACAGTAAACTACATTGATCGATATCTTTCAGGGAATTTGATGAACAGACAAAGGTTACAATTACTTGGTGTTGCCTCAATGATGATTGCCTCTAAATATGAGGAGATTTGTGCCCCTCAGGTGGAGGAGTTTTGTTACATAACTGATAACACCTACTTCAAAGAAGAGGTTTTGCAGATGGAATCTGCTGTCTTGAATTTTCTCAAGTTCGAAATGACAGCCCCAACAGTAAAATGTTTCTTAAGAAGATTTGTACGTGCAGCTCAAGGAGTCGATGAGGTCCCTTCGCTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTGTCTCTCTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCTGCTATCTTCCTGGCCAAATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCACATTGCATCATTACACGCTGTATCGGCCTTCTGATCTGTGTGTTTGTGTAAAGGATCTCCACCGTCTTTGTTGCAATAGCCCTAACTCTAATTTGCCCGCAATTAGGGAGAAATACAGTCAGCATAAGTACAAATATGTGGCCAAGAAGTGCTGCCCTCCTTCAATACCTTCAGAATTTTTCCAGAATTGA 1467 0.4581 MSSQNRRSSFSSSTTSSLAKRHAATASSENKALAKKRPPLTNLTNTVAHRNSSSSVPCAAKVAKTKKEVIPACSGNKRPTLANVKPSNAVVFPKASSLPERNVAAAAAPPPPPPSVSATVVVPAPSTVVDVSPSKSDGMSVSMDESMSSCDSFKSPDIEYVDNSDVAAVDSIERKTFSILNISDSAEPAGNICSRDILVELEKGDKFVNVDNNYADPQLCATFACDIYKHLRASEAKKRPSTDFMEKVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNLMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNFLKFEMTAPTVKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSKKPWNSTLHHYTLYRPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKCCPPSIPSEFFQN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01111 488 CDD CYCLIN 256 345 IPR013763 -
Cca03g01111 488 PANTHER CYCLINS 26 487 IPR039361 -
Cca03g01111 488 MobiDBLite consensus disorder prediction 39 59 - -
Cca03g01111 488 Pfam Cyclin, C-terminal domain 355 476 IPR004367 -
Cca03g01111 488 SMART Cyclin_C_2 355 478 IPR004367 -
Cca03g01111 488 SMART cyclin_7 359 447 IPR013763 -
Cca03g01111 488 SMART cyclin_7 262 346 IPR013763 -
Cca03g01111 488 SUPERFAMILY Cyclin-like 215 352 IPR036915 -
Cca03g01111 488 MobiDBLite consensus disorder prediction 1 60 - -
Cca03g01111 488 PANTHER CYCLIN-A1-1 26 487 - -
Cca03g01111 488 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g01111 488 ProSitePatterns Cyclins signature. 257 288 IPR006671 -
Cca03g01111 488 CDD CYCLIN 353 446 IPR013763 -
Cca03g01111 488 SUPERFAMILY Cyclin-like 355 480 IPR036915 -
Cca03g01111 488 Gene3D - 226 474 - -
Cca03g01111 488 PIRSF Cyclin_A_B_D_E 1 484 IPR039361 -
Cca03g01111 488 Gene3D - 240 353 - -
Cca03g01111 488 Pfam Cyclin, N-terminal domain 226 352 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01111 Cca-Chr3 26852320 26855708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01111 4 488 Core Cell Cycle Gene Families AT1G44110 62.348 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01111 K06627 - gmx:547781 817.379