Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01110 ATGTTTACCCGAAACCGACGCTTCCTGTCCTCTCCCGAGAAGAGGTCTTCCGTTTCGGAAAATTCAAGCAAGAAGAAGGTTACTGCGGTGAAGGATCAGACGGCAAAGAAGCGTCCCGCTCTCGCCGATGTATCCAATAACAGAAGGGCCTCTTTCTCTAAGCCCATGGTTCCATGTGTGTCCAAAACTGCCAAGACAAAGAAGGCTGGTTTGCAGAAGAGAGGCACTTTGCAAGCCCCATTGAGTGAAAAATCAAGTCGACTGGTACTTTCCAAAGAGGCACATTCGACCAAAAGTGGTGAATCCAAGGATGGAGTTGAATCCTTCGTTGCCCCATTCATTGATAAAGTGGTTTGTGCTCCGGGGTGGACGGACATTTCTCCAAGTAAATCCTTTGGCGGCTCTGTTTCACAAAGTGAGAGCATGTCAACCAGGGATTCCTTAAGTTTGGAATTTGAATATGATAATGTCATATCCACCAGATCAATTGAGAATAGGACATTTAACATTCTCAATATTTCAGAGTCTTCAAAAATAGCAGGGAGAATATGTGGTAGTGATATTGATACCATCCCGAAGATAGAAGCAAATGGAGTTGTGGATATTGACTACAGCATCAAGGACCCACAATTCTGTGCATCCATTGTCCATGAAATCTATGAATATTTGCGTGCATCAGAGAAAATTAAAAGGCCGTCTATGGACTTCATGGAGAAGATACAGAAAGACCTCAACCCTAGCATGCGCGCAATACTTATTGATTGGCTTGTGGAGGTAAACTATGGTTTCCGAAGAGCGACAATTACAATTACTTGGTGTTGCCTGCATGCAAAATACGAGGAGATATGTGCCCCTACGGTGGAAGAGTTCTGTTATGTAACTGATAATACATACTCTAAGGAGCAGGTGTTAGGGATGGAATCTGATGTGCTGAATTTCTTGAAGTTTGGAGTGACAGTTCCTACAGCTAGATGTTTTATGAGGCGCTTCATTATTGTTGCCCAACGAACTTGTAAGGTTCCATTGTTGCAGTTAGAGTATTTCGCTGATTATCTTACAGAGTTATCTCTTCTCGAGTATGGCATGCTTAAGTACACCCCATCGTTAATAGCTGCATCCGCCACTTTCTTGGCTAAATACATCCTACTTCCTAGTGAGAAACCTTGGAATCCTACACTAAAGCATTACACATGTTACCAAGCATCAGAATTGCGTGAATGTGTCAAGGGATTGCACTGGTTATGTTGTGATGGCTATGACTTACCTGCCATCAGGGAGAAATACAGCCAGCATAAGTTCAAGTTTGTGGCAAGGAAATATTGTCCTTCGTTTATACCTCTAGAGGTATTCCGCGACTAA 1359 0.4305 MFTRNRRFLSSPEKRSSVSENSSKKKVTAVKDQTAKKRPALADVSNNRRASFSKPMVPCVSKTAKTKKAGLQKRGTLQAPLSEKSSRLVLSKEAHSTKSGESKDGVESFVAPFIDKVVCAPGWTDISPSKSFGGSVSQSESMSTRDSLSLEFEYDNVISTRSIENRTFNILNISESSKIAGRICGSDIDTIPKIEANGVVDIDYSIKDPQFCASIVHEIYEYLRASEKIKRPSMDFMEKIQKDLNPSMRAILIDWLVEVNYGFRRATITITWCCLHAKYEEICAPTVEEFCYVTDNTYSKEQVLGMESDVLNFLKFGVTVPTARCFMRRFIIVAQRTCKVPLLQLEYFADYLTELSLLEYGMLKYTPSLIAASATFLAKYILLPSEKPWNPTLKHYTCYQASELRECVKGLHWLCCDGYDLPAIREKYSQHKFKFVARKYCPSFIPLEVFRD 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01110 452 Gene3D - 320 437 - -
Cca03g01110 452 Gene3D - 218 231 - -
Cca03g01110 452 PIRSF Cyclin_A_B_D_E 1 271 IPR039361 -
Cca03g01110 452 PIRSF Cyclin_A_B_D_E 268 448 IPR039361 -
Cca03g01110 452 CDD CYCLIN 319 412 IPR013763 -
Cca03g01110 452 Pfam Cyclin, C-terminal domain 321 437 IPR004367 -
Cca03g01110 452 Gene3D - 273 319 - -
Cca03g01110 452 Gene3D - 232 269 - -
Cca03g01110 452 SMART cyclin_7 329 413 IPR013763 -
Cca03g01110 452 SMART cyclin_7 235 312 IPR013763 -
Cca03g01110 452 Pfam Cyclin, N-terminal domain 218 267 IPR006671 -
Cca03g01110 452 Pfam Cyclin, N-terminal domain 273 317 IPR006671 -
Cca03g01110 452 MobiDBLite consensus disorder prediction 88 102 - -
Cca03g01110 452 SMART Cyclin_C_2 321 442 IPR004367 -
Cca03g01110 452 SUPERFAMILY Cyclin-like 320 444 IPR036915 -
Cca03g01110 452 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 273 451 - -
Cca03g01110 452 MobiDBLite consensus disorder prediction 8 38 - -
Cca03g01110 452 MobiDBLite consensus disorder prediction 1 103 - -
Cca03g01110 452 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 96 264 - -
Cca03g01110 452 SUPERFAMILY Cyclin-like 207 317 IPR036915 -
Cca03g01110 452 PANTHER CYCLINS 96 264 IPR039361 -
Cca03g01110 452 PANTHER CYCLINS 273 451 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01110 Cca-Chr3 26834578 26842467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01110 41 452 Core Cell Cycle Gene Families AT1G44110 45.119 3.34e-119 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01110 K06627 - ccaj:109796267 426.402