Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01109 ATGGCACCAGTCTTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGATGTTGCTCACCAAGACGAAGTTGTTCGAGTATTAACAAACACCCTTGAAACCGGAAGTTGCCCCCACATGCTCTTCTATGGTCCACCCGGCACTGGAAAAACAACTACTGCCCTTGCAATTGCCCATCAGCTTTTCGGGCCAGAGTTCTATAAGTCTAGGGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGGACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAATCAGCGTAAAAGTGATTATCCTTGTCCACCATTTAAGATTATTGTTCTAGATGAGGCAGATTCAATGACCGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTATCAGAAGAAATCATGAGCAGCAGGATATCATACATCTGCAAAGAAGAGGGTCTGTTTCTTGATGCTGAGGCTCTTTCAACCCTGAGTTCTATTTCTCATGGAGATCTTCGCCGGGCAATCACATATTTGCAGTCTGCTGCACGCTTATTTGGATCTTCAATTTCTTCAGAGAATCTGATTTCTGTGTCTGGGGTTATTCCAGCAAAGGCTGTGGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAACTTTGATTTGGCAAACAAGGAAGTCAACAATTTTGTTGCAGAGGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTAGAGGCCATTGTGGAAGAAAATGACATATCAGATGAACAGAAAGCAAGAATATCCAAAAAGCTGGGTGAAGCTGATAAGTGCTTAGTTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTAGTCAGCAATGCAATGAAAGCTTTTAGTAACATGCCAGAAGGATTTGCTTACGAGAGCTAG 1029 0.4247 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPEFYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSDYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRISYICKEEGLFLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVIPAKAVEALLKACKSGNFDLANKEVNNFVAEGYPASQMLTQLLEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNAMKAFSNMPEGFAYES 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01109 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 330 - -
Cca03g01109 342 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Cca03g01109 342 Gene3D - 240 329 - -
Cca03g01109 342 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 330 - -
Cca03g01109 342 CDD HLD_clamp_RFC 174 233 - -
Cca03g01109 342 Gene3D - 3 173 IPR027417 -
Cca03g01109 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Cca03g01109 342 Gene3D - 176 239 - -
Cca03g01109 342 CDD AAA 26 166 - -
Cca03g01109 342 SUPERFAMILY post-AAA+ oligomerization domain-like 241 325 IPR008921 GO:0003677|GO:0006260
Cca03g01109 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 232 IPR027417 -
Cca03g01109 342 SMART AAA_5 41 177 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01109 Cca-Chr3 26818208 26828020 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01109 1 338 Core DNA Replication Machinery Family AT1G21690 78.171 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01109 K10755 - gmx:100798331 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01109 03 26818208 26828020 Cca03g01109 03 26818208 26828020 ECH