Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01105 ATGGCAAGCTTAACCCAGCAGCAAGTGAAGGAAGGTAGCAACCGCATAGTAGCCGTCAATGCCACCCCCTCTAACGACCTTCCTGCACCATCTCAATCTCATCCCCAGAAACCTGGGTGGAAAAAGTTTTTGGCATATGTAGGTCCTGGCTTTCTGGTCTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGACCACAAATATGAGCTGCTGTGGGTAATACTTATTGGACTGGTGTTTGCGCTTATAATTCAATCATTGGCTGCGAATCTTGGCGTAACCACTGGCAAACACCTTTCAGAATTATGCAAAGCGGAATACCCATTATTGGTCAAGTACTGCTTATGGTTATTAGCTGAACTCGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTCGCGTTGAACATACTCTTCAAAATCCCAGTATGGGCAGGAGTTCTTGTTACTGGCTGTAGCACCCTCTTGTTTCTGGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAACTGCTGATATCAATGCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAATTGAGCTACGTGAAACCACCTGCTTCTGGTGTAATCAAAGGAATGTTCATCCCAAAACTCAGTGGTCATGGAGCCACAGGAGATGCTATTGCCCTTTTGGGTGCCCTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTGCTGTCTAGGAAAGTACCAAGTTCCGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGCGTTCGCACTGTTTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTAACGGGAACTGTGTGCTCTGCTGACAATCTTTCTGCAGAAAATACTGGTCACTGCAGCGATCTTACCCTTAACAGTGCTTCCTTCCTTCTCAAGAATGTGTTGGGAAAGTCGAGTTCAACAGTTTATGCTGTAGCACTGCTAGCCTCAGGACAAAGTTCAGCTATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAGGATGAAAACGTGGATCAGAAACCTTGTGACTAGGTGCATTGCCATAACACCTAGTCTCATTGTTTCCATCATTGGTGGTTCTGCAGGGGCTGGTCGGCTTATCATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTGCTTAAGTTTAGCAGCAGCAGTATCAAAATGGGACCTCACAAGAATTCTATAATTATCATTGTGATCTCATGGATACTAGGCTTGGGGATCATTGGTATCAATGTGTACTACCTCTCTACTGCCTTCGTGGATTGGCTAATTCATAATAGTCTACCAAAGATGGCGAATGTGTTCATTGGGATCATAGTGTTTCCTCTGATGGCAGTTTATATTGGCGCAGTAATCTACCTAACCTTCAGAAAAGACACTGTCAAGACATATATTGAGACAAAGAATGAACCAGCAATGCAAACCCACATGGAAAAGGGATTTATGAATAATGGTCAATTAGAGTTGAGCCAAGTTCCCTATAGAGAAGATTTGGCTGATATTCCACTGCCACAATAG 1614 0.4424 MASLTQQQVKEGSNRIVAVNATPSNDLPAPSQSHPQKPGWKKFLAYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFKIPVWAGVLVTGCSTLLFLGLQRFGVRKLELLISMLVFVMAGCFFGELSYVKPPASGVIKGMFIPKLSGHGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESAFALFVAFLINVAMISVTGTVCSADNLSAENTGHCSDLTLNSASFLLKNVLGKSSSTVYAVALLASGQSSAITGTYAGQYIMQGFLDMRMKTWIRNLVTRCIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSIKMGPHKNSIIIIVISWILGLGIIGINVYYLSTAFVDWLIHNSLPKMANVFIGIIVFPLMAVYIGAVIYLTFRKDTVKTYIETKNEPAMQTHMEKGFMNNGQLELSQVPYREDLADIPLPQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01105 537 PANTHER METAL TRANSPORTER NRAMP5 33 537 - -
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 122 148 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 150 169 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 175 196 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 225 248 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 335 354 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 363 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PRINTS Natural resistance-associated macrophage protein signature 395 414 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 33 537 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 Hamap Divalent metal cation transporter MntH [mntH]. 32 451 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 41 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cca03g01105 537 Pfam Natural resistance-associated macrophage protein 64 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01105 Cca-Chr3 26769447 26779558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01105 8 537 Inorganic Solute Cotransporters AT1G15960 58.427 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01105 K21398 - gmx:100787785 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01105 03 26769447 26779558 Cca03g01105 03 26769447 26779558 ECH