Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01101 ATGAAAATGGTTAGACAGAGTCCATCGTTGGAGTGGAGCATGGGGGATAGAGTGGAGACGCTTGCGAGATTAGCCCAATGGAGAATCGAAAACTTCGGACCTTCTTCCTACAAAAAATCTGATTCCTTCAAGGTCGGAATCTGGAACTGGTACTTTTCAATTGTGAGGAATAAGTATCTCTACATACATCTTTTTCCAGAACCTTCTTCGGTTTCTAAGGATTACCCACCCTTCGCCAGATTCATTCTTCGAGTCTCCAGTGCTGGCTCATCGCGCACCTTTCATATTTCCCCCGTTCAAGAAAAGCTGCTTAGAACACATGATGACTTTGTCTGGTCAGTGGATACTACTTTTGTTGGTCGCTTCATCATTGATGTTGAGTTTCTAGACCTGAAGATATGCCCTCCAAATGGTGGAGAAACTAGTTCTGTTTGGCCATCTGAAGGAAATTCACATTCCATTGCATTTCAAAATGGCACTCTTCGCATCCTCTCTCGCATGATTGAAGAGGCCATACATGCTGACCTAACCATCATCACTGCTGATGGCACTTTGAGAGCTCACAAGGCAGTTTTGTCAGCAAGTTCTCCAGTGTTCCAGAGCATGTTTCATCACAATCTAAAGGAAAAAGAATCCTCCACAATCCACATACAAGACATGTCACTTGAATCCTGCACGGCTCTTCTGAGTTACATATATGGAACAATCAAGCAAGAAGATTTCTGGAAGCACCGGCTTGCATTGCTTGGAGCTGCTAATAAATATGACCTTGGTGGTCTCAAAGATATCTGTGAGGAAAGCCTTATGGAAGATCTTCACTCAGGGAATGTTCTTGAGATGCTAAATGAGGCTTGGTTTTATCAGTTGCTCAAGTTAAAGAAAGGGTGTTTGGAGTTCTTGTTTAAATTTGGCAAGGTACATGATATTAGAGAGGATGAAATGAATAATTTTTTCCAGCATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAGATGCTTTCAATTTCCATCTCTCTATAA 1023 0.4223 MKMVRQSPSLEWSMGDRVETLARLAQWRIENFGPSSYKKSDSFKVGIWNWYFSIVRNKYLYIHLFPEPSSVSKDYPPFARFILRVSSAGSSRTFHISPVQEKLLRTHDDFVWSVDTTFVGRFIIDVEFLDLKICPPNGGETSSVWPSEGNSHSIAFQNGTLRILSRMIEEAIHADLTIITADGTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIQDMSLESCTALLSYIYGTIKQEDFWKHRLALLGAANKYDLGGLKDICEESLMEDLHSGNVLEMLNEAWFYQLLKLKKGCLEFLFKFGKVHDIREDEMNNFFQHADRELMLEMFQEMLSISISL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01101 340 SUPERFAMILY POZ domain 158 270 IPR011333 -
Cca03g01101 340 Pfam BTB/POZ domain 169 270 IPR000210 GO:0005515
Cca03g01101 340 ProSiteProfiles BTB domain profile. 174 233 IPR000210 GO:0005515
Cca03g01101 340 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 14 337 - -
Cca03g01101 340 PANTHER OS08G0495500 PROTEIN-RELATED 14 337 IPR044714 -
Cca03g01101 340 SMART BTB_4 174 272 IPR000210 GO:0005515
Cca03g01101 340 Gene3D Potassium Channel Kv1.1; Chain A 151 301 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01101 Cca-Chr3 26734459 26737489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g01101 BTB 2.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01101 K10523 - gmx:100787262 581.637