Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01087 atggggaggggtaagattgagatcaaaaggattgagaactcaagcaacaggcaagttacctactcaaagaggaagaatgggatccttaagaaggcaaaggaaattagtgttctatgtgatgctcaagtttcccttatcatcttTGGTGCTTCTGGAAAGATGCATGAATACATCAGCCCCTCCACCACGTTGATTGACGTCCTGGACAGATACCAAAGAGCCTCTGGGAAGACCCTCTGGGACGCTAAGCATGAGAACCTCAGCAATGAAATTGATAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAGGACATTACCTCACTGAATTACAAGGAACTGATGGCTCTAGAGGATGCCCTTGAAAATGGACTCAGTGGTGTCCGCGAGAAAAAGATGGAAGTGCACAGGATGTTCAAGAGAAACGGCAAGATTTTGGAGGAGCAAAATAAGGAACTGAATTTCCTTCTGcaacaacatttggcactagaaggTGTGGGAAACATGCATGGACAGTGGATATGA 546 0.3242 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGASGKMHEYISPSTTLIDVLDRYQRASGKTLWDAKHENLSNEIDRLKKENDSMQIELRHLKGEDITSLNYKELMALEDALENGLSGVREKKMEVHRMFKRNGKILEEQNKELNFLLQQHLALEGVGNMHGQWI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01087 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 175 - -
Cca03g01087 181 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 175 - -
Cca03g01087 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Cca03g01087 181 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g01087 181 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Cca03g01087 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca03g01087 181 Pfam K-box region 81 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g01087 181 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Cca03g01087 181 Coils Coil 77 111 - -
Cca03g01087 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01087 Cca-Chr3 26474389 26477380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01087 1 143 MADS-box Gene Family AT5G20240 69.231 3.30e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca03g01087 K-box 8.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01087 K09264 - gmx:100795861 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01087 03 26474389 26477380 Cca03g01087 03 26474389 26477380 ECH
Cca05g00915 05 24629021 24633996 Cca03g01087 03 26474389 26477380 PCT