Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01086 ATGATTGTTATGGGGTCGTGTGGGAGATCTGCTGTCATCGATGGTCCCTCTGGGGGGTCTGTTACTGAGCACCATTTGTGTTCTGGGATTCCGGCGCAGGTGGTTTCTGTGGAGGAGTCTTGTTTGGGAGAGGCTTGCGATGTGATTGACTCTAATGTTGACCTCGCCACTGTGACCGATGGTGGTGCGGGTTCTGCAAGCTGTGTTCGTGTTTCTGAGGGGTCTGGTGATGCTTTGGGTTCCGCGAGTGGATGTGAAAATACTGGTTTGTTGCCGCTGGAGAAGACTGCTGAAGATGATTGTCTCAATTGCTTGGGGGTTTCTTGCGGGAGCATTGAAGTTCCCTGTCTTAAAAGTGTCTCAGAGGGGAATTTTCTGGATGAGGGCAACTTTGACCCACTGTCGGGGTCGATAACGACTAGTGATTTGCAGGGGCATTGTGCACAGCAGGATGAGCAGATGGATGATAAGAGCAGCGAATTACCTGCAGCAGATGATTCGGCTGTCGTGGAAGGCAAAAATGACTACGCCGGTGTTTCTGCTGATGCTTTCAACTGTGTACTTGATTTCAGGGATCCTGAAATGTCTTTGGAATCGGACTCCGTGGCTGACTTGCTAGTTGATTGCAACCAGCACAGCGAGCAGGAGGAAATTATGAGAAGAGCAGATCCCTTGTTGAATGTTGTGGAAAAATGTGATGCTCTAATTGGGACAGAAGCTGATGGTTGCGGGCAGGTATCTCCTTCTCCCGCTATGGAAGGGCCATCAGGTGCTTTATATACAGATAAAGAAATAGACAGCACAAGTGATCAGCCATGTGATTGGAAAGAAGGTGAGGATAAGAATAGTACTTGTGAAGAAAAGGTTAAAGCTTTTGTTGATGAAGAAACCAACATTAGTTCATGTGCAAAAATTTTGTCCTCTCCTGGTTGCTGTAGGACCGTTGGGAGATCACCTGTAGTTGATTCTCCTTCTCCTGCTATGGAAGCTGATGCTTGCAGGCTAATAACTCCTTCTCCAGTTATGGAAGTTCCATCAGGTGCGATATGTACAGTTACAGAAGTAGAGAGCAGAAGTGATCAGCCATGTGAGGCTTTAGTTACCAACTACTCTTCAAAGGATGTTCCTGATCTCCATTGTGATGATGTCTCCATTAATAATAATAATAATGTTGTGGACAATCCAGGGAAGATGAATAATGATGGAAAAGAAGATGTTGAAGTTAATTGTATCAATGAAAGCATACCATTACCTTCTCAGAGGAATCGTCGAAGAACTCAATTTGGCCGTAAGACACAAACCAAAAAGGCTTCAAAAAAATGTAAGAACAAAGCCAAGGAGACACATTCAAGTGAAGGTATGGAGCTAAAGGCTGCCAGAAAGAAAAGAAGTCATTTCCCCAACACAGCTCGTAATTCTATGTGGGGATCTGGGAATATTGAACAGTTTTTTGAGCAAGATAATGAGCTTGGAGTTGGTGAAGCTGCACGCCAAGAATTGGGGAAGGCTAAAAGCAAGCGTCAAAGTGGGAAAACAGTCAAGAATGGGGCAAGTTCTAGCTCTATAAGTCCAGTACAGAAGTGTCCTGTTTTAACTACACGTGTTCGTCTGAAGATCAAATTCGGGAAAGAAGTTGATTTAAATTGCTCAAATGTCTTGATTCCAGAGTCTGTTGATGGCTTGGCATCTGCTTTCCACTTGGGGTCTGATTCAAGTTCTCAGAAAGTAGCCAGGAATGCTGAAGATAAAATTTCTGAAGCAGTGGCTTTGGGCAATTCAGAATCTTTTAACAATGAGTTGGACAAGGATGGTCTTGTTCTAAATGGACAAGTTGCAAATAACCCCCCCTTAGAAGATACTGAAATAACAAAGAAGTCAGGTGAGTATACAGAGGAACCTTGTATTGCAGTTCCTCCAGGGAAGGTGGTTGAAGCATTGATTGAACCTATCAATAACAAGGGTATGGATCCTGGAACTTCCCCTGATTCAGAAGTTATCAATTCAATTCCCGAAGTCCAGGTTGGAGAAAGACAGCAAGAAGATGTACATCATGCTGTTTTAGGTTCTTCTAAAAAGTTGAACCCTGAAGTGGATGTTATCCTCAACAAGAGAGGGAGGAAGAAAGACAAACTTATTTCTTCAAGTAATTGTATCACTGAAGATGGATCACAAGGTCCACCTGGGAATAGTAGGGCTAAGCATTCAAAGAATCGCAAACGTAAGAAAAATAGCAGGGATGCAGCTAGCTCTTTGGAATTGCCTACTTTCACTGAGATAAGCAAATCAGTGAGCACTAAAGATTCGTCCTCAGAATCATTGCTCCCTTCTGGAGAGACTGAACTTGGAGGTTCCACTGAGGCTTTGAAAGTTAAAAATCACATGGAAGTTAAGACAGGTGGCAAACCAACCTTTGACCATGGATTTTCAGAATTCCCGGCTTCTGAGAATTTGCTGTGTTCTGCAAGACCTTTGGGGCGTAAACTACCTAAAAGGCTTAGACCTAGTAAAGTTAGCAAGACCAAATCTAAAGCTTCTGACTCAACTGGCAGGAAAAAGAGTACTTGTACACACAAGGAGAAACAGAAAAAGCCAATTAATAAGAATGAAGTCAAAGGAAAAGGTGTCTCTCTTAATGTCACATGTGAAGCAGAAGATCGCCCACATCCAGAAGTAAATGTTGGAAATCATAAGTTGGATGCTGTTGGAAAAATTAATGCTGATAACAACAGAGTATCAGTCAATTTACCTAATCTGGACATGCCGTCCGGTGTTGGATTGGGGGAGCAACTTCTATCTCCCCGTAATGCATGGGTGCGTTGTGATGATTGTCTCAAGTGGCGGCGAATTCCAGCTGGGCTTGCAGACCTAATTGATGAAACTAACTGCACCTGGACATGTGCGGACAGCAGTGATAAAGCCTTTGCTGACTGTGCTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGGATTATCTGACGCGTCAGGTGAAGAAGATGCATATGAAGGCTGCAGAAATTTTAAGGAATTAGAATATCGGCCTCCATTTGTTTCCCAGGAGTCTTCTTTTACCCATATTTTCACCAATGAATTTCTTCATCGTAGCCACAAAAGTCAGACCATTGACGAGATAATGGTCTGTCATTGCAAGCCGCCTCAAGAAGGAAAATTTGGCTGTGGGGATGAATGTCTAAATCGGATTCTTAACATCGAATGTGTACAAGGAACTTGCCCATGTGGGGATCGTTGTTCCAACCAGCAGTTCCAAAAACGCAAGTATGCTTGCTTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCGATAGAGAATGTAGCTCAAGGCCAGTTTCTTATTGAATATGTTGGAGAGGTGCTTGATATGCAAACCTACGAGGCACGGCAACGAGAGTATGCTTTGAAGGGTCATCGGCATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAACGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGATGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTAATTGTCGAGGTTATATAGGTGGTGGTGATCCACTTGCTGAACTGGTAGTTCAAAGTGATTCAGAAGATGAATTTCCCGAACCTGTTATGCTTACTGAAGATGGTGAAATTGAAGATGCTCTACCGACACCCAAATATTTTAATAATGTTGATAAACAATCTGCTAAACATATGTTAAATAACAAGGACATATTGGACAAGTCTACAACTGCTGTAGATTCAGATTGTTCTCCAGAGAAAGAGAGTTCTACAAACCTTGCCCCTGCTGTTTCTCTGTCGCACAGCTCAGTAGAAATGGAGGACAAGGCCAAGTTACCATCTTCTGTTCAAGATGAGGAAAGTAATCAACAAATGGAGGATGAAACAAGCAAACCCATGCCTGCTGTACAAGGAAATGAAAAGGAATCAGATTTTGCAGACAAAACTTCTTCACTTCAAAGATTTGAGACTACTTCTCCCCTTGCAACTGTCAGCAAAATGTTACCAAATTCTACTGGTAGTATTAGGGAGTCAAAGTCTGAAATAATTGAAGGCAGGAAGACATCCAAGTTAAATGGTTCTGTTAAAAAGGGAAAGCTTCATGCCAATCCACCGAATGGCCTTAAATCTGAGGTAATAGCCAATCGATTGCAGGTGTCATCTATCAAACACAAAAAAGTAGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGCGGAATAAGCAAAAGAAAAGATGCCACCAAAGGGTACTTGAAGCTTTTGTTTCTCACTGTGGCATCAGGTGATAGAAGCAATGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGACGCACTTCTGAAAACAAAATCTCGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATTATGAAGCAGTACAGGCAGGACTTCAAAAAAATTCCAATACTACGGAAGCTTCTTAAGGTCTTGGAGTACCTAGCAGCAAATAAGATATTGACATCTGAACATATTAATGGTGGTCCCCCTTGTCATGGAATGGAGAGCTTTAGAGAGTCTATGCTTTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTTCGAGACAGATGGTTTCCGAGGCCCATAAGAAAACACGGTTATATGGACAGGGATGATAATAGAGTGGAATCTCACAGAAGTTTCAACGGTAACAGATTTTCAGCATCACACAGTCATAGGCATGAGCAGGATTTAAGGACTACAGAAGCAATTGATGGCAGTCAGCAGTCAATGCTTGTGACAGCTCCAGTAGATGCTGATGCCCAGGAAGGCTGTCCTGCACAGTCTCGAGATGGGGTTGAAACCAAAGGAGCTAGAAAACGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAGACAAACTCACATTCTGATGCAGTTATGAGCTCTATTGGTGAAAGCCAGAACATTTATGAGGATGTTCCACCAGGGTTTTCGTGTCCAATAGGTTCATTAAATACTTCCCTAAACTCTGGTAATGTTGTCTTGCAAAATGCAAGCCGTTCTGGATGTCCCCCTGATTTAGTTATCGGTCATCCTAAAGAGAAATTTAACTCTCGCTTGCCTATCTCATATGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACACCTCATGCTGAATTTTCTGAGTGTTGGGTGACTGCACCTGGCATGCCTTTCAACCCATTCCCTCCACTACCCCCATATCCGCGGGACAAAGACTGTCAACCTTCTAATACTACTAATGCTATGATAATTGATCAACCTGCTGAAGTTAAGCGTTGGGATACCAGTGGTGTGGTTAATTGTTGCTCAGATGAAATGATTCCCAGCACAACCGGTGCTAACCCTGAAGACTCGAACCTTCTGTTCGAGGACAATAAACACATAACTAAACGATTGAAGGGTGACTCTAATGATTTGGGAACGAGGTATTTTAGACAGCAGAAATGGAATAACTCAAAAATACATCGACCATGGTTCAGGAAGAATGCATGGGAATGTAATGAGAACAACTCTAGTGGTGATATGTGCAGTATAGATGTAGATGTACCAAAAGAGTCAAAAGTTACTTGTGATGCGGAGGATGCAATCTGTAGAGAGGAGAAAGGTGGCAATAATATTTATTAG 5886 0.4256 MIVMGSCGRSAVIDGPSGGSVTEHHLCSGIPAQVVSVEESCLGEACDVIDSNVDLATVTDGGAGSASCVRVSEGSGDALGSASGCENTGLLPLEKTAEDDCLNCLGVSCGSIEVPCLKSVSEGNFLDEGNFDPLSGSITTSDLQGHCAQQDEQMDDKSSELPAADDSAVVEGKNDYAGVSADAFNCVLDFRDPEMSLESDSVADLLVDCNQHSEQEEIMRRADPLLNVVEKCDALIGTEADGCGQVSPSPAMEGPSGALYTDKEIDSTSDQPCDWKEGEDKNSTCEEKVKAFVDEETNISSCAKILSSPGCCRTVGRSPVVDSPSPAMEADACRLITPSPVMEVPSGAICTVTEVESRSDQPCEALVTNYSSKDVPDLHCDDVSINNNNNVVDNPGKMNNDGKEDVEVNCINESIPLPSQRNRRRTQFGRKTQTKKASKKCKNKAKETHSSEGMELKAARKKRSHFPNTARNSMWGSGNIEQFFEQDNELGVGEAARQELGKAKSKRQSGKTVKNGASSSSISPVQKCPVLTTRVRLKIKFGKEVDLNCSNVLIPESVDGLASAFHLGSDSSSQKVARNAEDKISEAVALGNSESFNNELDKDGLVLNGQVANNPPLEDTEITKKSGEYTEEPCIAVPPGKVVEALIEPINNKGMDPGTSPDSEVINSIPEVQVGERQQEDVHHAVLGSSKKLNPEVDVILNKRGRKKDKLISSSNCITEDGSQGPPGNSRAKHSKNRKRKKNSRDAASSLELPTFTEISKSVSTKDSSSESLLPSGETELGGSTEALKVKNHMEVKTGGKPTFDHGFSEFPASENLLCSARPLGRKLPKRLRPSKVSKTKSKASDSTGRKKSTCTHKEKQKKPINKNEVKGKGVSLNVTCEAEDRPHPEVNVGNHKLDAVGKINADNNRVSVNLPNLDMPSGVGLGEQLLSPRNAWVRCDDCLKWRRIPAGLADLIDETNCTWTCADSSDKAFADCAIPQEKSNAEINAELGLSDASGEEDAYEGCRNFKELEYRPPFVSQESSFTHIFTNEFLHRSHKSQTIDEIMVCHCKPPQEGKFGCGDECLNRILNIECVQGTCPCGDRCSNQQFQKRKYACLKWFKCGKKGYGLKAIENVAQGQFLIEYVGEVLDMQTYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEELTFDYNYVRVFGAAAKKCYCGSPNCRGYIGGGDPLAELVVQSDSEDEFPEPVMLTEDGEIEDALPTPKYFNNVDKQSAKHMLNNKDILDKSTTAVDSDCSPEKESSTNLAPAVSLSHSSVEMEDKAKLPSSVQDEESNQQMEDETSKPMPAVQGNEKESDFADKTSSLQRFETTSPLATVSKMLPNSTGSIRESKSEIIEGRKTSKLNGSVKKGKLHANPPNGLKSEVIANRLQVSSIKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAANKILTSEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWFPRPIRKHGYMDRDDNRVESHRSFNGNRFSASHSHRHEQDLRTTEAIDGSQQSMLVTAPVDADAQEGCPAQSRDGVETKGARKRKRKSRWDQPAETNSHSDAVMSSIGESQNIYEDVPPGFSCPIGSLNTSLNSGNVVLQNASRSGCPPDLVIGHPKEKFNSRLPISYGMPWSVAQQYGTPHAEFSECWVTAPGMPFNPFPPLPPYPRDKDCQPSNTTNAMIIDQPAEVKRWDTSGVVNCCSDEMIPSTTGANPEDSNLLFEDNKHITKRLKGDSNDLGTRYFRQQKWNNSKIHRPWFRKNAWECNENNSSGDMCSIDVDVPKESKVTCDAEDAICREEKGGNNIY 1961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01086 1961 SUPERFAMILY SET domain 1025 1235 IPR046341 -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 715 731 - -
Cca03g01086 1961 ProSiteProfiles SET domain profile. 1097 1214 IPR001214 GO:0005515
Cca03g01086 1961 MobiDBLite consensus disorder prediction 822 871 - -
Cca03g01086 1961 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 406 1887 - -
Cca03g01086 1961 Gene3D SET domain 996 1245 IPR046341 -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 710 788 - -
Cca03g01086 1961 ProSiteProfiles AWS domain profile. 1045 1095 IPR006560 GO:0005634|GO:0018024
Cca03g01086 1961 CDD SET_SETD2 1096 1238 IPR044437 GO:0010452|GO:0046975
Cca03g01086 1961 MobiDBLite consensus disorder prediction 497 524 - -
Cca03g01086 1961 SMART set_7 1097 1220 IPR001214 GO:0005515
Cca03g01086 1961 MobiDBLite consensus disorder prediction 424 443 - -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 748 779 - -
Cca03g01086 1961 ProSiteProfiles Zinc finger CW-type profile. 931 985 IPR011124 GO:0008270
Cca03g01086 1961 MobiDBLite consensus disorder prediction 839 869 - -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 417 474 - -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 1301 1323 - -
Cca03g01086 1961 Pfam AWS domain 1060 1094 IPR006560 GO:0005634|GO:0018024
Cca03g01086 1961 MobiDBLite consensus disorder prediction 1301 1377 - -
Cca03g01086 1961 ProSiteProfiles Post-SET domain profile. 1222 1238 IPR003616 -
Cca03g01086 1961 PANTHER SET DOMAIN PROTEINS 406 1887 - -
Cca03g01086 1961 Pfam SET domain 1108 1214 IPR001214 GO:0005515
Cca03g01086 1961 SMART shorttest3 1045 1096 IPR006560 GO:0005634|GO:0018024
Cca03g01086 1961 MobiDBLite consensus disorder prediction 444 462 - -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 510 524 - -
Cca03g01086 1961 Pfam CW-type Zinc Finger 937 983 IPR011124 GO:0008270
Cca03g01086 1961 SMART PostSET_3 1222 1238 IPR003616 -
Cca03g01086 1961 MobiDBLite consensus disorder prediction 1678 1718 - -
Cca03g01086 1961 Gene3D - 928 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01086 Cca-Chr3 26450351 26465312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01086 1080 1237 C2H2 Transcription Factor Family AT2G23740 34.286 1.45e-20 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g01086 SET 2.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01086 - - ccaj:109797051 3878.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01086 03 26450351 26465312 Cca03g01086 03 26450351 26465312 ECH