Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01085 ATGCAATTGTATCATCATCCATTTGATTTGGACAGTCAGAAGGTGAGACTTGCCTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGTCAATCCCATAACCGGCAAGAACTTGGATTCTTCATTCTTCAAGATGAATCCCGGTGGAAGGCTCCCAGTTTTCCAAAATGGCTCTCACATAATTCACAAAACTATTGATATAATCCGGTACATAGAAAGAATTGCTGTCTTCTCCTCGGGGTCTGAGAATATCACTACCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAAGTACTTTTCCCTTTTCCATATACCAGAGAAATACAAGATATATGTTTCAAAGTTCTTAAGGCGAGTGGTGATTGCTCGAATGTCTGAGTCTCCTGAATTAGCAGGTGCTTACCATAAGAAGTTAAAAGAAGCCTATCAGACTGAAGAGAAACTGAAAGATGCAGATGTTTTGAGAAGAAGCAAGGAGCATTTGAATGGTCTGCTTGATGAAGTAGAGAGGCAGCTAAGTGAAACACCTTATTTAGCAGGTCAAGAGTTTACCATGGCTGATGTGATGCTCATTCCAGTGTTGGCTCGTTTAACACTCTTGGATTTAGAGAATGAGTACATAACTTGCAGGCCAAACGTTGCTGAGTATTGGGTTTTGGTTAAGCAGAGGCATAGTTATAGGAAGGTGATTGGTAGGTATTTTGATGGTTGGAAAAAGCACAAGACATTGGTAAAAACTTGGTGCTTTGTTCGTATTAGGAGTTTGCTCAAGAGGTACTAG 804 0.4055 MQLYHHPFDLDSQKVRLALEEKGIDYTSHHVNPITGKNLDSSFFKMNPGGRLPVFQNGSHIIHKTIDIIRYIERIAVFSSGSENITTSSREVIEWMQKIQEWDPKYFSLFHIPEKYKIYVSKFLRRVVIARMSESPELAGAYHKKLKEAYQTEEKLKDADVLRRSKEHLNGLLDEVERQLSETPYLAGQEFTMADVMLIPVLARLTLLDLENEYITCRPNVAEYWVLVKQRHSYRKVIGRYFDGWKKHKTLVKTWCFVRIRSLLKRY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01085 267 SUPERFAMILY GST C-terminal domain-like 151 239 IPR036282 -
Cca03g01085 267 CDD GST_N_family 1 73 - -
Cca03g01085 267 SFLD Glutathione Transferase (cytosolic) 1 230 IPR040079 -
Cca03g01085 267 CDD GST_C_family 148 225 - -
Cca03g01085 267 Pfam Glutathione S-transferase, N-terminal domain 1 74 IPR004045 -
Cca03g01085 267 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Cca03g01085 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 252 IPR010987 -
Cca03g01085 267 Gene3D Glutaredoxin 1 75 - -
Cca03g01085 267 Gene3D - 120 238 - -
Cca03g01085 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Cca03g01085 267 Pfam Glutathione S-transferase, C-terminal domain 161 209 - -
Cca03g01085 267 Coils Coil 159 179 - -
Cca03g01085 267 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Cca03g01085 267 SFLD Main (cytGST) 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01085 Cca-Chr3 26444182 26447432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01085 1 267 Glutathione S-transferase Gene Family AT1G77290 70.412 6.69e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01085 K22077 - gmx:100792543 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01085 03 26444182 26447432 Cca03g01085 03 26444182 26447432 ECH
Cca05g00914 05 24622673 24624903 Cca03g01085 03 26444182 26447432 PCT