Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01084 ATGCTGCAAACGGCTCCTGCCGGAGAAGCCACCCGCGGCGGCTCCGGCAGCCGGAGGGTGGTGGTGGGGGTCAAGCTGGACTCCCCCAGCAAAGAATTGCTCACGTGGGCTTTGGTCAAAGTTGCACACCCCGGTGACACCGTCGTTGCTCTGCATGTGCTTGCTAACCATGAAACTGTGAATGGAGATGGGAAATCGTCGCTGCTTTCGCTTATTAAGACGTTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAAATTTGCCGTGGTTCATCAGTGAAGAAGATTTTGGTTCGAGAAGCTAGCGGTTATTCGGCAACTCATGTTGTGGTTGGAACTACTCATGGCCTGCATAAAATCCGGTCATCTACCTTTGTAGCTAAGTACTGTGCTAAAAAGTTGTCCAAGGATTGTTGTGTTCTTGCTGTTAACAATGGGAAAGTTGTGTTCAAGCGAGACGGCACGCCACTGAGTGTTGCTGACTTACAAGGGATTGATGGTCATCACAGAAACGGTTTGATTAGTTCAATTCATTGGACACTCAGTAAGCGTACAAAGGTACTAAGTGATGACAATTCAGGGGTGGATGCTAATGAGAAGAAAATTGGCCAGATTTCAGATCGCAGTTTAGCCAAGTTTTTTCTGGATTCAACAGAAACTGTTACAAAACCAAGCTGTTCAATTTGTGGCACAACCCTGGCATTGCCAGACCCTTCTTGCTACCAATCTGCAGAAGGGTTTTCTGGTGATGATTGTAGAGAGAATTCTTTGGCTATAGTGCCTGTGCAACCAACTGTTGCAACAAAACAGGAATTGAAACCAGGTTGGCCTCTACTACACAGCAGAATTTTATCGGACAAGCAATCTACTGAAAGATCATTGAGGCGCCCCCAGATCTCCGTGGTTCAGTGGGCAATGAGGTTGCCTTCTAGAAATCTTTCATATGCTGTAGATCGTGATGAAAAACCTAGCATTTGTGATCTAGATCAACCTGCGGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCAGTAGATTATGAAATAGGGATCGCTTCTTCGCCGGAATGCAATTCAAGAAACATTCCTAAAGAGTTGGAGGGCCTTCATGAGAAATACTCATCAACTTGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCCACATCGAATTTCATGCCAGAAAACTTGATTGGGAAAGGAGGAAGCAGTCAGGTGTATAGAGGCTGCCTCCCTGATGGCAAGGAACTTGCCGTCAAGATCCTAAAGCCTTCTGATGATGTATTGAAGGAGTTTCTTCTGGAAATAGAAATTATCACTACCTTGCACCATAAAAACATTATTTCCCTCCTGGGGTTCTGCTTTGAGAATGGAAATCTGCTTCTGGTTTATGATTTCTTATCAAGAGGAAGCCTCGAAGAGAATCTTCATGGGAATAAGAAAAAATCACTTGCATTTGGTTGGTCTGAGAGATATAAGGTAGCAGTGGGTGTTGCCGAGGCTATAGATTATCTGCATTCTAAAGATGATCAACCTGTGATTCATCGAGATGTAAAGTCATCAAATGTATTATTATCCGAGGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCAAAATGGGCATCAACCTTGTCATCACATACAGCCTGCACAGACGTTGTTGGAACCTTCGGTTACTTGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGACAAGATTGATGTCTATGCATTTGGTGTTGTACTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGCAGCGAGTATCCTAAAGGCCAAGAGAGTCTTGTTATGTGGGCAGGTCCAATTCTAAATAGTGGAAAGGTGTTGCAATTGTTGGATCCTAGTTTGGGTGATAAATATGATCATGAGGAGATGGAAAAGATGGTATTGGCAGCCACGCTCTGTATCAAACGTGCGCCAAGGGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTTCAAGGTGACGCGGATGCAATCAAGTGGGCAAGGGTAGAAGTCAATGCTTTGGACGCATCAGATATGCTTGATGATGAAGCATGTCCACCTAGTAATATGCAGTCACATCTAAACCTTGCACTGCTTGATGTGGAGGATGACTCAGTCTCCATATGCAGTGTTGAGCAGGGTCTCACATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCGAATCGAGCTTCGATTGA 2244 0.4479 MLQTAPAGEATRGGSGSRRVVVGVKLDSPSKELLTWALVKVAHPGDTVVALHVLANHETVNGDGKSSLLSLIKTFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREASGYSATHVVVGTTHGLHKIRSSTFVAKYCAKKLSKDCCVLAVNNGKVVFKRDGTPLSVADLQGIDGHHRNGLISSIHWTLSKRTKVLSDDNSGVDANEKKIGQISDRSLAKFFLDSTETVTKPSCSICGTTLALPDPSCYQSAEGFSGDDCRENSLAIVPVQPTVATKQELKPGWPLLHSRILSDKQSTERSLRRPQISVVQWAMRLPSRNLSYAVDRDEKPSICDLDQPAALDSESGALVPVDYEIGIASSPECNSRNIPKELEGLHEKYSSTCRLFEYQELVSATSNFMPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFLLEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLHGNKKKSLAFGWSERYKVAVGVAEAIDYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTLSSHTACTDVVGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSEYPKGQESLVMWAGPILNSGKVLQLLDPSLGDKYDHEEMEKMVLAATLCIKRAPRARPQMSLISKLLQGDADAIKWARVEVNALDASDMLDDEACPPSNMQSHLNLALLDVEDDSVSICSVEQGLTLEDYLRGRWSRESSFD 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01084 747 ProSiteProfiles Protein kinase domain profile. 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01084 747 Gene3D Transferase(Phosphotransferase) domain 1 476 688 - -
Cca03g01084 747 Gene3D HUPs 17 155 IPR014729 -
Cca03g01084 747 SMART serkin_6 401 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01084 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Cca03g01084 747 PANTHER OS08G0249100 PROTEIN 11 730 - -
Cca03g01084 747 Gene3D Phosphorylase Kinase; domain 1 366 475 - -
Cca03g01084 747 CDD USP_Like 19 153 - -
Cca03g01084 747 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Cca03g01084 747 CDD STKc_IRAK 407 674 - -
Cca03g01084 747 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 153 - -
Cca03g01084 747 Pfam Protein kinase domain 404 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01084 747 PANTHER - 11 730 - -
Cca03g01084 747 SUPERFAMILY Protein kinase-like (PK-like) 382 673 IPR011009 -
Cca03g01084 747 Pfam Universal stress protein family 18 150 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01084 Cca-Chr3 26415396 26419389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01084 388 668 Trihelix Transcription Factor Family AT1G68690 44.056 9.56e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca03g01084 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01084 - - aprc:113846853 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01084 03 26415396 26419389 Cca03g01084 03 26415396 26419389 ECH