Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01080 ATGCCTCCGCGGCGGTGCACGGCGCCAGCGACGCTGCAGACGAGCAGCGACAGCGACGACTTGGAGGACTTCATCATGCGGTGCCTCTCGTGCGAGGAGGAGTACGACGCGGACGACGCCGGCACGTGCAAGGAGTGTTATCAAGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCACGAGATCGAAGAGCTCAAGGCCAAGCTCTCCTTCCTCGCTCTCCCCTCTCCCCTTCTCAATCCCTCCACCGGTGACCTCGTTCTCCTTCCCGCTGACGACTCCTCCGCTGTTCCTATCCCCGCTCACAAGCACATTCTGGTTAGTCGCTCTCCTGTTTTCAAAGCAATGCTTGAGAATGATATGACGGAAAGCCGGAGTGGCACCATCAAGATCTCAGATGTATCATATGATACCCTTCGTGCTTTTGTTGACTATTTATACACTGCTGAAGCATCCCTTGATAACCAAATGGCCTGTAACCTGTTGGCCTTAGGAGAGAAGTATCAGGTGAAGCATCTTAAGACATACTGTGAGAAGTATTTGATCGCCAAAATGAATTGGGATAAAGCTATTGCAAACTATGCCTTCGCATATCAATACAATTGCAAACAATTACTAAATGCGGCCTTGGCAGTGATCTTGGACAACATGGATTGCCTCACTCAAAATGAATATTATGCGGAGCTGGTGGACAGTCATCCTCGTCTTGTTGTGGAAATATATGAAACATATCTTGTCAGACAATTAAATACTGCAGGCGCCTTTAGGTTACAGGATCAGAGCTAA 783 0.5006 MPPRRCTAPATLQTSSDSDDLEDFIMRCLSCEEEYDADDAGTCKECYQEANEAEEELRHEIEELKAKLSFLALPSPLLNPSTGDLVLLPADDSSAVPIPAHKHILVSRSPVFKAMLENDMTESRSGTIKISDVSYDTLRAFVDYLYTAEASLDNQMACNLLALGEKYQVKHLKTYCEKYLIAKMNWDKAIANYAFAYQYNCKQLLNAALAVILDNMDCLTQNEYYAELVDSHPRLVVEIYETYLVRQLNTAGAFRLQDQS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01080 260 SUPERFAMILY POZ domain 96 181 IPR011333 -
Cca03g01080 260 ProSiteProfiles BTB domain profile. 83 154 IPR000210 GO:0005515
Cca03g01080 260 Pfam BTB/POZ domain 91 182 IPR000210 GO:0005515
Cca03g01080 260 Gene3D - 185 257 - -
Cca03g01080 260 Gene3D Potassium Channel Kv1.1; Chain A 51 184 IPR011333 -
Cca03g01080 260 SMART BTB_4 83 184 IPR000210 GO:0005515
Cca03g01080 260 Coils Coil 43 67 - -
Cca03g01080 260 PANTHER GH01369P 25 251 - -
Cca03g01080 260 CDD BACK 193 228 - -
Cca03g01080 260 CDD BTB_POZ_ZBTB_KLHL-like 98 167 - -
Cca03g01080 260 PANTHER SPECKLE-TYPE POZ PROTEIN 25 251 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g01080 BTB 6.6e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01080 K10523 - gmx:100794118 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01080 03 26359859 26362991 Cca03g01080 03 26359859 26362991 ECH