Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01079 ATGGGAACTGGGGATGGAACTGGCGATGCTGATAAGACTGAATGTGGTGAAGGAGTTCAGTGTTTGAAAGGTGAAGCCATGAATGGTGGGGTGGCAATTGCGGATGGGAATTGTGTTACTGAAGAGGGCAAGCCCTTGAAAAATGAAGGCATGAATAATGGGGTGGCAATTGCTGATGGAAATGGTGTTGCTGAAGAGGGTAGGCTCTTGAAAAGTGAACCTGTTTGTAATGGGGTAGCGGTCGCCGAGAAAGGGGACTCTGGTGGAGTTGAATATCTGCGAACTTATAAGAGGCGTAAGAAGTCAAGTTCAAGAGGCAAAGTTCAGGAACAATGCAGAGAAAGCGTGGAAGCTGCAAGTCATGTAGCAGATAAGGTTGTGAAGAAACCGTGTGATGTAGCTTTAGGCAATATTTCAGGTGATTGTTCCCTTGGACAGTGGGGAAATATTGTACTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGCGGCATAGAGGGGTGCATAAGGGAAGCACTTAAGCATCATCCTAAACTTAATCATACCACTTCAGTTTCGAAAACTTTTCAAATTGACAAAGATGGAGAAGAATGCTATTCGCAATTTATGCATCTTTGTCATAGAACAGGGAATGAAGCTAATGGGCATGCAGATGTTATGTGTAATGGACGTTCTAGTGACTCACCTGGCCATGGTGTGACTGAGATGTGTCAGCGTGTGCTCAGTAATATCTTAACTTCAGAAAAATTCAGTTCATTATGTAAGGCTTTACTTGAAAATTTCCAGGGGGTGAAGCCTGAAAGTGTATTTGACTTTACTGTCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTCTTCTTGTCAGATATTCAGCAGGTTTGGAGAAAGCTTCAAGACACTGGTAATGAGATTGTTGCCCTTGCCAAGAGCCTCTCCAACATGTCAAGAACTTCGTACTCTGAGCTGGTGGGAATTCCATCACAGAGCACATTTCAAGATGAAAAGCAAGTGCTCTACAACCGGGAATTTGACTATTACATGAAACCAGAACAGACAGAAGAATGTGCTGTGTACAAAATTTGCAGTTGCAGGCGTTGTGGAGAGAAGGCAGATGGCACAGACCGTCTGGTCTGTGATTCATGTGAGGAGATATATCATGTGTCCTGTATCGAGCCTGCAGTGAAAGAAATACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCTAAGGGGATTGGTTCTCCACATGAGAATTGTGTCTTATGTGAAAGGTTAAATGATTCAGAGACCCCGAATGACGTAATTGGTGATGAAAGCTTTCCAACAGTTGAGGAAACCCAAAATGAATTTGAAGATAATTCAAATTGCACCTCTGATGGGATTCAAGTTTCCATTGGTGAGAAAAAAACACCCAATTGCAAAATATGTGGAAATGAAGTGGATGATGGAAAAACAAAAGTATGTGGCCATCGGTTTTGCTCCAATAAATACTATCATGTAAGGTGTTTAACAAGTAAGCAGTTAAAGTCATATGGTCACTGTTGGTACTGCCCTTCTTGTTTATGCCGGGTTTGCTTAATTGATCAAGATGATGATCAGATTGTTCTCTGCGATGGCTGTGATCATGCATATCACATCTATTGCATGAAACCTTCTCGAACTTCTATTCCAAGAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATACAAGCAATCCGCCAGGCTAAAAGGGTATATGAGAGCAACAACCCAAGAAGAAATGGTGAAGATGTTGCAAAATCAACTGCTAATCTTGAAAAGAAACACAACAATAAACGTGCACGAGAATTGGAAAGAGGTGGAGCTATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAGGAGAAAGAGGCAGCACTCCAGATTGAGTCACAGAGAACATGA 1950 0.4205 MGTGDGTGDADKTECGEGVQCLKGEAMNGGVAIADGNCVTEEGKPLKNEGMNNGVAIADGNGVAEEGRLLKSEPVCNGVAVAEKGDSGGVEYLRTYKRRKKSSSRGKVQEQCRESVEAASHVADKVVKKPCDVALGNISGDCSLGQWGNIVLKHLYQSLGDGNGGIEGCIREALKHHPKLNHTTSVSKTFQIDKDGEECYSQFMHLCHRTGNEANGHADVMCNGRSSDSPGHGVTEMCQRVLSNILTSEKFSSLCKALLENFQGVKPESVFDFTVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIVALAKSLSNMSRTSYSELVGIPSQSTFQDEKQVLYNREFDYYMKPEQTEECAVYKICSCRRCGEKADGTDRLVCDSCEEIYHVSCIEPAVKEIPHKSWYCANCTAKGIGSPHENCVLCERLNDSETPNDVIGDESFPTVEETQNEFEDNSNCTSDGIQVSIGEKKTPNCKICGNEVDDGKTKVCGHRFCSNKYYHVRCLTSKQLKSYGHCWYCPSCLCRVCLIDQDDDQIVLCDGCDHAYHIYCMKPSRTSIPRGKWFCRKCDAGIQAIRQAKRVYESNNPRRNGEDVAKSTANLEKKHNNKRARELERGGAMDMLLTAANTLNFEEKEAALQIESQRT 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01079 649 Gene3D - 261 416 - -
Cca03g01079 649 Pfam PHD-finger 369 415 IPR019787 -
Cca03g01079 649 Pfam PHD-finger 528 573 IPR019787 -
Cca03g01079 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 578 IPR013083 -
Cca03g01079 649 SMART PHD_3 528 573 IPR001965 -
Cca03g01079 649 SMART PHD_3 478 527 IPR001965 -
Cca03g01079 649 SMART PHD_3 368 414 IPR001965 -
Cca03g01079 649 SUPERFAMILY FYVE/PHD zinc finger 354 415 IPR011011 -
Cca03g01079 649 SMART ring_2 479 526 IPR001841 -
Cca03g01079 649 SMART ring_2 369 413 IPR001841 -
Cca03g01079 649 SMART ring_2 528 572 IPR001841 -
Cca03g01079 649 ProSiteProfiles Zinc finger PHD-type profile. 525 575 IPR019787 -
Cca03g01079 649 ProSiteProfiles Zinc finger PHD-type profile. 366 416 IPR019787 -
Cca03g01079 649 ProSiteProfiles Zinc finger RING-type profile. 479 526 IPR001841 -
Cca03g01079 649 PANTHER D4, ISOFORM A 149 637 - -
Cca03g01079 649 PANTHER HISTONE ACETYLTRANSFERASE 149 637 - -
Cca03g01079 649 SUPERFAMILY FYVE/PHD zinc finger 527 578 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01079 Cca-Chr3 26343416 26351781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01079 527 588 C2H2 Transcription Factor Family AT3G01460 45.161 1.65e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g01079 PHD 2.5e-12 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01079 03 26343416 26351781 Cca03g01079 03 26343416 26351781 ECH
Cca05g00905 05 24343946 24381122 Cca03g01079 03 26343416 26351781 PCT