Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01075 ATGGCTTCATCACGGGATAATACAAAAGTTGCGCTAGTTGCTTGGTTGCTAATAATGATCTCAGCAATGTCACAAACGATTCATCCTAGCTGCCCAAAAAAATGTGGAAGTGTTAACATTCCGTACCCTTTTGGTACAACTGAGGACTGTTACATGAACAACAACTTTTATGTTGCTTGTAACACAAGTCACAACCCTCCCAAACCATTTCTGTGGAATTTGACCAAAAATATTGAGATCTTAGAGGTGTCATTGAATGGCCATTTGAGGATAAAATCCCCCGTAGCTTATGTCTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATCCATGACTTTGCAAGCATTCCATTTCTCATATACTCAGAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAACCATCAATGCAACAATTGGGAAAAATTACTCAGCTGGAGGATGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAACCAACGGATCCTGGTTTGGCGTTGGTTTCTGCCAAACCTCTATCCCAAAAAACATTTTGGCATATCAAGCTCGTGTCCTGAGATCAAATTTCATGCATAGGGATATAAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAGGACTCTTTCAAGTTTTCCACTGATGACTTCATCAAACAGCATGAGAGAAGAACCGCTCCCACGGTGCTTGATTGGGCCGTTGGAAATCAAACATGTGAAGAAGCTAAGAAGAATTTGACTCGTTATGTTTGCCAAGAAAATAGTGTATGTATTGACTCTGACAATGGACCTGGGTACCTTTGCAGATGCTTAGAAGGTTATGTGGGAAATGCATACCTGCATGGTGGATGCGAAGATATTGATGAGTGTGCCAATCCTAGCCTAAATGAATGTTCAGATATTTGCATTAACCTACCTGGGAGCTATAATTGTTCTTGTCCCAAGAGCAAAAGGTACCAGGGAGATGGTAGAAAAGGAGGAAGTGGTTGTGTCTCGGATCTACAAGTGGTTAATGAGGTTGTGATAGGAACTGGCATAGGCCTTGTGCTGTTGTTAATTGGTAGTGGCTGGCTATACTATGTGTTCCGCAAAAGAAAGAGAGTGAGGCTCACAGCAAGATATTTTAAGCAAAATGGAGGCTTAATGCTACAGCAGAAAATTTCAAACATGGAAGAATCATCTGAGAGAGCCAAAATTTTCACAGCGAGAGAGCTAGTGAAAGCCACTGAAAACTTTCATGAGAGCAGAATCATTGGCAGAGGAGGATACGGCACAGTCTATAAGGGAATACTTCCAAATGACCAAGTTGTAGCCATAAAGAAATCAAAACTAGTAGACCACAGCCAGATTGAACAATTCATCAATGAAGTGGTTGTACTGTCCCAAATAAACCACAGAAACGTGGTCAAACTCCTAGGTTGCTGTCTAGAAACAGAAATGCCACTTCTGGTTTATGAATTTGTGAAAAATGGCACCCTCTTTGACCACATTCACAATGAAAACACCACACTTCCTTGGGATGCACGTCTAAGAATAGCAGCAGAAACAGCTGGTGTGCTTGCCTACTTGCATTCTTCTGCCTCCATACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGAGAAATACACAGCCAAGGTTTCTGACTTTGGAACCTCGAGATTGGTTCCACGTGACAAGTGTCAGTTGACAACGTTGGTTCAGGGAACTCTTGGTTACCTTGACCCTCAATACTTTCAGACCAGCCAACTAACTGAGAAAAGCGATGTGTATAGCTTTGGTGTTGTGCTTGCTGAGTTGCTAACTGGAAGAAGGGCACTCTCTTTTGACATGCCAGAGGAGGAGAGGAACCTAGCCTTTGACCAGGTGAAGGAAGTTGCTAACATTGCTCAATGGTGCTTGAGGCTTAGAGGTGAAGAAAGACCCACCATGAAGGAAGTGGCAAGGGAATTGGATGGTCTCAGAATGATGACCCCAACTACGTATGTGATTGGTGAGGGATCATGTCAAAGTCAAATAGAAACTAACTATGAAAATTGTCGTTATACTCATACTACATCATGCACTGGCCCTGAGGATGACACCATTTGCAAAGATGTCATGTCACCGTTATGGGATGGCAGATGA 2148 0.4218 MASSRDNTKVALVAWLLIMISAMSQTIHPSCPKKCGSVNIPYPFGTTEDCYMNNNFYVACNTSHNPPKPFLWNLTKNIEILEVSLNGHLRIKSPVAYVCYDEKGVLVDSGNSSMTLQAFHFSYTQNKFIGIGCDTLSTINATIGKNYSAGGCFSLCSSVESSTNGSWFGVGFCQTSIPKNILAYQARVLRSNFMHRDINIPCSYSLLVEEDSFKFSTDDFIKQHERRTAPTVLDWAVGNQTCEEAKKNLTRYVCQENSVCIDSDNGPGYLCRCLEGYVGNAYLHGGCEDIDECANPSLNECSDICINLPGSYNCSCPKSKRYQGDGRKGGSGCVSDLQVVNEVVIGTGIGLVLLLIGSGWLYYVFRKRKRVRLTARYFKQNGGLMLQQKISNMEESSERAKIFTARELVKATENFHESRIIGRGGYGTVYKGILPNDQVVAIKKSKLVDHSQIEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVKNGTLFDHIHNENTTLPWDARLRIAAETAGVLAYLHSSASIPIIHRDFKSTNILLDEKYTAKVSDFGTSRLVPRDKCQLTTLVQGTLGYLDPQYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDMPEEERNLAFDQVKEVANIAQWCLRLRGEERPTMKEVARELDGLRMMTPTTYVIGEGSCQSQIETNYENCRYTHTTSCTGPEDDTICKDVMSPLWDGR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01075 715 SUPERFAMILY Protein kinase-like (PK-like) 401 671 IPR011009 -
Cca03g01075 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 627 IPR045274 GO:0007166
Cca03g01075 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 628 681 IPR045274 GO:0007166
Cca03g01075 715 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Cca03g01075 715 SMART egf_5 292 334 IPR000742 -
Cca03g01075 715 SMART egf_5 241 288 IPR000742 -
Cca03g01075 715 Gene3D Laminin 239 291 - -
Cca03g01075 715 Gene3D Laminin 292 329 - -
Cca03g01075 715 CDD STKc_IRAK 421 661 - -
Cca03g01075 715 SMART egfca_6 242 288 IPR001881 GO:0005509
Cca03g01075 715 SMART egfca_6 289 334 IPR001881 GO:0005509
Cca03g01075 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 24 627 - -
Cca03g01075 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 628 681 - -
Cca03g01075 715 SUPERFAMILY Growth factor receptor domain 237 704 IPR009030 -
Cca03g01075 715 Gene3D Phosphorylase Kinase; domain 1 379 490 - -
Cca03g01075 715 Gene3D Transferase(Phosphotransferase) domain 1 491 671 - -
Cca03g01075 715 ProSitePatterns Calcium-binding EGF-like domain signature. 289 314 IPR018097 GO:0005509
Cca03g01075 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Cca03g01075 715 ProSiteProfiles Protein kinase domain profile. 415 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01075 715 Pfam Calcium-binding EGF domain 289 319 IPR001881 GO:0005509
Cca03g01075 715 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Cca03g01075 715 Pfam Protein kinase domain 415 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01075 715 CDD EGF_CA 289 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01075 Cca-Chr3 26135663 26144745 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01075 31 665 Receptor kinase-like Gene Family AT1G21230 44.934 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca03g01075 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01075 - - gmx:100797492 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01075 03 26135663 26144745 Cca05g00078 05 1713390 1717189 PCT