Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01070 atgaaggatgaagatttttattcgagcttcttcaactcCTCATTTCTCATCACTTGCAACAAAAAACTCCCCGCACCCATCCCATACTTGAAGGATAGTTTTGGTCAAAAAGTGCGTGTGTTAGACATCTCACTTGACGGCAAACTCAACATTTCGTTGCCAGTAGCCACACGTTGCACCAAACATACCAACAACGAATCAGTGAATGGAAGGAGTTTGTATGAGTTCGACCTCGCACCCTTTCACCTATCACCCAAGCAAAACAAGTTAACTGTGGTGGGTGCTGACGCCGCTGGTATAATATATGAAAATATTACAAGTGACATGTTAAATGCTACCGCTGCATGTGTGTCGCTCTCTTTCTATGTTGATGGGGAGCTAGCATCTAACGAGTCATGCACTGGCACTCACTGTTGCGACACTCCGATACAACAAAGCCTATCGAGTTTCCTCTATTATTCTACTGTAAATATCTTCAATAGCAACTACAGCAATCCACAGATTAACAATTACTCATGCGGTTATGCATTTCTGGTTAAGGATGGAGCCTACCAGTTCACCACCACCAAAGGCCTTGACAAAAACACATTTCCTGTAGTTCTGGATTGGGCAGTGGGGAACCAGACAGACACGTGGCAAGATCACAGTGCGTGCAAGTCAGAACATAGTCAAGGTCACCCTGCAGAGGCAGGACCCGGTTATAATTGTAATTGCTCTGCTGGTTGGAGGGGGAACCCTTACCTCCTTCATGGTTGCACAGACATTGACGAATGCAAGGAATCATCCCACGAATGTTTTGAGGGGGCTAGATGCGAAAACTTTCCTCCTGGGAACTACACCTGTCACTGTCCAGATGGACATAAAGGAGATGGCAGAAAAAGTGGAACAAAATGCACTCGCAAAGGCAAAGACAATATAATCATAATTGCTTTGAGTGTGAGTGTGAGCATCTTAACATTTATCGGGGGAACCTTTTATGTGTATTGGACATCAAAGAAAAGAAAGCTCATGAAACTTAAAGAACATTTTTTTCAGCAAAATGGTGGCCTATTCTTGCAACAAGAAGTAGCTAGGTATAGTGGGTCAAATGAGATGACTAAAATCTTTACCATGGAGGAACTAAAGGAGGCCACCAACAATTTTGATGAAGGCACAATCCTAGGCCAAGGTGGCCAAGGAACAGTTTACAAAGGGATATTACCTGACAACAGAATTGCAATAAAAATGTCCAAAATTAGCAATACAAACCAAATTGAGCATTTCATCAATGAGGTGATCTTGCTTTCTCGAATCAACCATAGGAATGTGGTGAAGCTCTTGGGATGTTGTTTAGAGACTGAAGTTCCCTTGCTCGTTTATGAATTCATCCCCAACAGTACTGTTTATGAGCATCTTCACGATCAAAGCCAATCTTTAAGACTTACATGGAAAACACGATTGCAAATAGCAACAGGAAGTGCTGGGGCCCTAGCATACTTGCATTCTGCTACCACTACACCAATCATACATAGAGATGTGAAAACTACAAACATTTTACTTGATCACAATCTCACTGCAAAAGTTGCTGATTTTGGAGCTTCAAGGATTATTCCTCTAGATCAAACTCAACTTACCACATTGGTGCAGGGAACACTGGGTTATCTTGACCCAGAATACTTCCATACAAGTCAATTAACAGAGAAAAGTGATGTATATAGTTTCGGAGTAGTTCTAGTTGAACTACTAACAGGTAAGAAAGCACTATCTTTTGATAGGCCAGAGACTCATAGAAACCTTGCGATGCACTTCCATTCTTCAATCAATGAGGGTGGATTGCTAAACATTATTGATAGCCAAATAATAGATGAGGCAAATGTTGAGCAACTAATGGATGTTGCCAATATTGCAAAACATTGTTTAAGGTTGAAAGGGGAGGAAAGGCCCACCATGAAAGAAGTTGCGACAGAACTTGAGGCAATAAGCATTGTGGAAAAGCACCGATGGGAAAAAGTCAACTTGTCTTTGGAGGAGACCGAAAATCTTCTCAAAGCAACACCATCATATTCTTTCAGTGTGGTTGATGGTGCTGACAAAAGAAGTTTGCAATCTGGATCTGATAGTTTAAGTCGGATTTCCTTATCCTTAAATGGGAGATGA 2136 0.4092 MKDEDFYSSFFNSSFLITCNKKLPAPIPYLKDSFGQKVRVLDISLDGKLNISLPVATRCTKHTNNESVNGRSLYEFDLAPFHLSPKQNKLTVVGADAAGIIYENITSDMLNATAACVSLSFYVDGELASNESCTGTHCCDTPIQQSLSSFLYYSTVNIFNSNYSNPQINNYSCGYAFLVKDGAYQFTTTKGLDKNTFPVVLDWAVGNQTDTWQDHSACKSEHSQGHPAEAGPGYNCNCSAGWRGNPYLLHGCTDIDECKESSHECFEGARCENFPPGNYTCHCPDGHKGDGRKSGTKCTRKGKDNIIIIALSVSVSILTFIGGTFYVYWTSKKRKLMKLKEHFFQQNGGLFLQQEVARYSGSNEMTKIFTMEELKEATNNFDEGTILGQGGQGTVYKGILPDNRIAIKMSKISNTNQIEHFINEVILLSRINHRNVVKLLGCCLETEVPLLVYEFIPNSTVYEHLHDQSQSLRLTWKTRLQIATGSAGALAYLHSATTTPIIHRDVKTTNILLDHNLTAKVADFGASRIIPLDQTQLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLVELLTGKKALSFDRPETHRNLAMHFHSSINEGGLLNIIDSQIIDEANVEQLMDVANIAKHCLRLKGEERPTMKEVATELEAISIVEKHRWEKVNLSLEETENLLKATPSYSFSVVDGADKRSLQSGSDSLSRISLSLNGR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01070 711 ProSiteProfiles Protein kinase domain profile. 381 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01070 711 CDD EGF_CA 254 290 - -
Cca03g01070 711 CDD STKc_IRAK 387 653 - -
Cca03g01070 711 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 13 689 - -
Cca03g01070 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Cca03g01070 711 SMART serkin_6 381 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01070 711 SUPERFAMILY EGF/Laminin 252 291 - -
Cca03g01070 711 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 689 IPR045274 GO:0007166
Cca03g01070 711 ProSiteProfiles EGF-like domain profile. 254 299 IPR000742 -
Cca03g01070 711 SUPERFAMILY Protein kinase-like (PK-like) 363 656 IPR011009 -
Cca03g01070 711 Pfam Protein tyrosine and serine/threonine kinase 384 650 IPR001245 GO:0004672|GO:0006468
Cca03g01070 711 Gene3D Transferase(Phosphotransferase) domain 1 456 673 - -
Cca03g01070 711 SMART egfca_6 254 299 IPR001881 GO:0005509
Cca03g01070 711 Gene3D Laminin 208 298 - -
Cca03g01070 711 Gene3D Phosphorylase Kinase; domain 1 356 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01070 Cca-Chr3 25913823 25916531 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01070 12 661 Receptor kinase-like Gene Family AT1G21230 45.551 5.61e-180 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Cca03g01070 PK_Tyr_Ser-Thr 6.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01070 - - vun:114162142 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01070 03 25913823 25916531 Cca03g01070 03 25913823 25916531 ECH
Cca05g00076 05 1645570 1649431 Cca03g01070 03 25913823 25916531 PCT