Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01058 ATGGATAGCCCTCCTTCTGCATCTTACGTCATCTTTGCATGTGATGCCACTAGGGACCGCACTGAACACGAGATCAAACTCGTTGTTAATCATGTTCGTACCAGGGGTGTCTTTCTTTCTTCTGGTGACAAGTTGCTTGTGCTATGTGTCTTGCATAAGGTGTCTCACCCTATGGGGTACCAGACATTACCTTGTCCCGAGTCTTTTGCTGGCACCAGCTTTCGTGCAATGGAGGAAGAAGTCAAAAAGAAAGTTGATACATATGCAAGTGAGCTTTTATCAAGTTATGAAGATTTTGAAAGTGAAGGGCTTAGTATCGAAGTTAAAGTCACCGCGGGATTTCCAATTAAACAGGTTCTTTTACAAGAGGTCACAAACTATAATGCATCTTGGATAATACTTGACAGACATCTTCGGCGCGACATGAGATACCACCTTAACAAGATGCCATGTAAAGTGGCATTGGTTAAAGATGACTTGTCTCTGGATATCTGGAGATCTCAATATGCACATGACACAAAGGTCATAGAAACAAAGTTTGTATATTCTTTGTCAAAGTTGGTGTCTCTATCAGATTGTCATAGCGTTGAAGACATTGAGCAGTCTATTATCTCTTGCAAAAGTTATCCCCATTCTATATATTCTTCTGATAGCTCTAGTACGATTAGGAGCTATACAAAGCAGTCAAATAAGGATAACAGGTCGCGGGAGCACTGTTCCATATCAGATTTTGGGTCTTCTTCTAAGCAAGAAAGATCAGGTACAAGCATCAAAGGAGAATTTAAGCATTTGATTACTTCTCAGATTGATCAAAAGCAAAACCAATGTGACTTTCTGCCAAAACATTCAGATGCACCGCTTCTTTGTACTGGCTGTGGGACAAGAACTGAGTTGTCTATCAAGGAATCAATGAGGTTCAGCTATTCTGACATACAACTTGCAACAAATGATTTTTCAATGGATAACTTATTAGGTGAAGGTGGATATGGTCACGTATATAAGGGTGTGCTTAAAGATGGACAGCAAATTGCTGCAAAGGTAAGGAAAGAAGAAAGTTCACAAGGATTTTCTGAATTTCATTCTGAGGTGTACGTCTTAAGTTTTGCTCGACACAAGAACATAGTGATGCTGTTGGGTTACTGTTGCAAAGGAAAGAAAAATATTCTGATTTATGAATATATTTGCAACAAGTCTCTCCATTGGCATTTATTTGAAAATAATGAAGCGGTTCTAGAGTGGCACCAAAGGTATGCTATTGCTATTGGGACAGCAAAGGGATTGCGTTTTCTGCATGAGGAATGTCGTGGTGGTCCTATTATTCATAGGGACATGCGACCAAGCAATATACTTCTAACCCATGATTTTGTTCCCATGCTAGGTGACTTTGGCCTTGCTAAATGGAAGACTGGTGATGACACTCTACGAACAAGGATAATGGGCACAATGGGATACCTTGCTCCCGAGTATGCCGAAGATGGTATTGTTTCTGTGGGATTAGATGTGTATTCTTATGGCATTGTTCTGTTACAGTTGATATCAGGACGCCAGGTTGGCAATTCCACTAATCCAGAACGAGAACAATCTCTCCGACAATGGGCTGAGCCAATTATTGAAAAGTTGGCTTTACATGAATTGATTGACACCCGTCTAGGAGAATCATATGACACTTATGAACTCTACCTCATGGCTAAAGCAGCACACTCGTGTGTTCAAAGGAAGCCTGAGAAGCGTCCATCAATGGGACAGGTTGTGCGGTTTCTTGAGGGAGAAAGTAGCCACTTTCACTCCTTGGAAGATCAATTTTTACCTAAATAG 1815 0.4077 MDSPPSASYVIFACDATRDRTEHEIKLVVNHVRTRGVFLSSGDKLLVLCVLHKVSHPMGYQTLPCPESFAGTSFRAMEEEVKKKVDTYASELLSSYEDFESEGLSIEVKVTAGFPIKQVLLQEVTNYNASWIILDRHLRRDMRYHLNKMPCKVALVKDDLSLDIWRSQYAHDTKVIETKFVYSLSKLVSLSDCHSVEDIEQSIISCKSYPHSIYSSDSSSTIRSYTKQSNKDNRSREHCSISDFGSSSKQERSGTSIKGEFKHLITSQIDQKQNQCDFLPKHSDAPLLCTGCGTRTELSIKESMRFSYSDIQLATNDFSMDNLLGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYVLSFARHKNIVMLLGYCCKGKKNILIYEYICNKSLHWHLFENNEAVLEWHQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTGDDTLRTRIMGTMGYLAPEYAEDGIVSVGLDVYSYGIVLLQLISGRQVGNSTNPEREQSLRQWAEPIIEKLALHELIDTRLGESYDTYELYLMAKAAHSCVQRKPEKRPSMGQVVRFLEGESSHFHSLEDQFLPK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01058 604 MobiDBLite consensus disorder prediction 226 254 - -
Cca03g01058 604 MobiDBLite consensus disorder prediction 240 254 - -
Cca03g01058 604 SUPERFAMILY Protein kinase-like (PK-like) 302 590 IPR011009 -
Cca03g01058 604 Gene3D HUPs 19 158 IPR014729 -
Cca03g01058 604 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Cca03g01058 604 Pfam Protein kinase domain 320 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01058 604 PANTHER RECEPTOR-LIKE KINASE 8 598 - -
Cca03g01058 604 ProSitePatterns Tyrosine protein kinases specific active-site signature. 439 451 IPR008266 GO:0004672|GO:0006468
Cca03g01058 604 PANTHER OS01G0253100 PROTEIN 8 598 IPR045271 GO:0004714|GO:0006468
Cca03g01058 604 ProSiteProfiles Protein kinase domain profile. 318 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01058 604 Gene3D Transferase(Phosphotransferase) domain 1 395 600 - -
Cca03g01058 604 CDD STKc_IRAK 324 589 - -
Cca03g01058 604 Gene3D Phosphorylase Kinase; domain 1 291 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01058 Cca-Chr3 25730205 25734521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01058 306 588 Trihelix Transcription Factor Family AT5G38560 45.172 9.28e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca03g01058 Pkinase 3.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01058 - - vun:114163670 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01058 03 25730205 25734521 Cca03g01058 03 25730205 25734521 ECH