Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01051 ATGGAGGATTCTTCAGCTGGTGAAGACACCAAGACTTGTCCTCGTGGCCACTGGAGACCCGCTGAGGATGAAAAGCTTAAACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATCGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGGTTAAGGTGGTTCAATCAGCTTGACCCAAGAATCAACAGAAGACCATTCACGGAAGAGGAAGAAGAGAGGTTACTCGCAGCTCATCGCATTCATGGGAACAAGTGGGCACTCATAGCGAGACTCTTCCCTGGTAGAACTGATAATGCTGTGAAGAACCACTGGCATGTTATAATGGCGAGAAAACAAAGGGAACAGTCCAAATTATGTGGTAAGAGAAGCTTCCAAGACGTTTACAACGATTCCAACAACACTTCCTCGTTCCTGGAAAAGAGAACACCGCAATCTCAAGACCTATTGTTCAGTACGAGATTCGGGTTGGAGAATGGAAGATTCTTTGACTTCCGAAGCCTCGACaataataaggataaggataataataataataatcataatcataGGATAGTTGCAGATACTCCATCTAGTTCTCTGGCGTCTTGGAATTTTGCTTCTGTGCCAACCACCACAAACGGTTCTACTGTAGTGGATAGAAAAGGAGGGAGAGACTATTTCAACAGTGCTTCTTCTGATATTTATCTCTCGGAATGTTCCAGAACCTCGGATAGGTCCTTTCTTTACAGAATTTATCCGAATCCTGCGTTCTCGCTTCCAAACTACAAGAGGGTTGTGCCAAGTCCCTTTGGCTTCCTCGCTTCTTCTGATGATGGAATTGGAAGGATAAAGAGGGAATTGATGAGTTTCGGGGATAACTCATCCACATTCTCAAAGTTGGAGAAAGATCATCAACAAACAAATGAAGATGAGACCAATACCGAGCCCAAAGAAGTTCCCTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 990 0.4263 MEDSSAGEDTKTCPRGHWRPAEDEKLKQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNNTSSFLEKRTPQSQDLLFSTRFGLENGRFFDFRSLDNNKDKDNNNNNHNHRIVADTPSSSLASWNFASVPTTTNGSTVVDRKGGRDYFNSASSDIYLSECSRTSDRSFLYRIYPNPAFSLPNYKRVVPSPFGFLASSDDGIGRIKRELMSFGDNSSTFSKLEKDHQQTNEDETNTEPKEVPFIDFLGVGVSSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01051 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca03g01051 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g01051 329 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Cca03g01051 329 PANTHER TRANSCRIPTION FACTOR MYB56 6 327 - -
Cca03g01051 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Cca03g01051 329 Gene3D - 15 66 - -
Cca03g01051 329 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Cca03g01051 329 MobiDBLite consensus disorder prediction 294 314 - -
Cca03g01051 329 Gene3D - 69 131 - -
Cca03g01051 329 PANTHER MYB PROTEIN-RELATED 6 327 - -
Cca03g01051 329 Pfam Myb-like DNA-binding domain 18 78 - -
Cca03g01051 329 MobiDBLite consensus disorder prediction 1 21 - -
Cca03g01051 329 CDD SANT 18 59 IPR001005 -
Cca03g01051 329 CDD SANT 69 109 IPR001005 -
Cca03g01051 329 MobiDBLite consensus disorder prediction 291 314 - -
Cca03g01051 329 SMART sant 66 114 IPR001005 -
Cca03g01051 329 SMART sant 14 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01051 Cca-Chr3 25535849 25537892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01051 13 122 MYB Transcription Factor Family AT1G17950 83.636 6.31e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g01051 Myb_DNA-bind_6 9.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01051 K09422 - gmx:100817328 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01051 03 25535849 25537892 Cca03g01051 03 25535849 25537892 ECH