Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01050 ATGTCATTGGTTAGATCTGCTGATCTAGCTCCTACATCATATGAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATGTTAGACCAGGCTTGTCCTCCCAAATTTTTGGTCCTGATAAGCATAGAAGCACATACATGACAGATACTTGCTCCCGCGAGAGTTATGAGAAGTACTTCCATGACTCACAAACAGAAGAACTGATAGAACCATCTAGTTCCAGCATCTCTGGAAGCTCAATTCACCCTGATGCAGCCTCTTCATACCAGCTCAGAGCTAGTTCAGGAGCTTCTATGGTTGCTAATAACCCATTTGATACTTCTTCCATGTCTACTAGGCATCATGGTGGTTATCGATCTAACTTTGGATCAGATTTGATGGAGAATGTTAGCCTGGATTCACGTGACAATGATGGTCAAATGAAATTAAAACTACAAGCATTGGAGAGGGCATTGCTTGATGATAGTGATGCTgaggaggaggaggaagaggaagaCATATTTGAGGCTACTCAAAGCATGGAAATAGACCCTGACATTGCTGAGTGGGCTGATTCCATGCAGAATATGCTGCTCCATGATTCACCAAAGGAGTACTCATCTTCAGATTCCAATATTAGCAGCATCAGCAGCACCAAAGAAACGTTACAAACTTTTCATAACCCCAAGCAACTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGAAGAGGAAGGGTCATCTATGATAAACAATCTCCGGCAGATGGTCTCAATTCAGGGAGAGCCTTCTCAAAGAATTGCAGCCTACATGGTTGAGGGGCTTGCAGCTCGCCTCGCCGAATCCGGAAAAAGCATTTACAAAGCTCTGAGATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCGGCAATGCAGATACTGTTTGAGGTTTGCCCTTGTTTCAAATTTGGATTTATTGCCGCTAACAATGCAATAACAGAAGCAGTGAAAGATGACATGAAGATTCATATAATAGACTTTGACATCAATCAAGGAAGTCAGTACATAAATCTAATTCAAACACTTGCTTCAAGGTCAAGTAAGCCACCCCATGTTAGATTGACAGGGGTTGATGACCCTGAGTCTGTGCAAAGATCTGTTGGAGGCCTAAAGATCATAGGACAAAGACTAGAGAAACTCGCAGAAGCACTTGGTTTGCCATTCGAGTTTCGAGCAGTGGCATCAAGGACTTCCATTGTCACCCCATCAATGCTCAATTGTAGACCTGGTGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACGGTAAACGAACGCGACCAGCTTCTGCGCTTGGTGAAGAGCTTGAATCCAAAGCTTGTGACAGTTGTGGAGCAAGATGTGAACACAAACACTACCCCCTTCTTGCCTAGATTTGTTGAGGCCTACAATTACTACTCAGCTGTGTTTGAGTCTCTTGATGTGACTCTCCCTAGAGAAAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCAAGGGACATTGTCAACGTTGTTGCATGCGAGGGCGAGGATCGGATTGAACGGTATGAGGTTGCAGGAAAATGGAGGGCAAGGATGACAATGGCTGGCTTCACTTCATCACCAATGAGCACAAATGTGACTGATGAAATCCGAAAACTCATTAAGGTGATGTATTGTGACAGGTACAAGATAAAGGAGGAAATGGGGGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCCTCAGCTTGGAAGCTACCAAGATAA 1788 0.4312 MSLVRSADLAPTSYENAKLYSLKGTDVRPGLSSQIFGPDKHRSTYMTDTCSRESYEKYFHDSQTEELIEPSSSSISGSSIHPDAASSYQLRASSGASMVANNPFDTSSMSTRHHGGYRSNFGSDLMENVSLDSRDNDGQMKLKLQALERALLDDSDAEEEEEEEDIFEATQSMEIDPDIAEWADSMQNMLLHDSPKEYSSSDSNISSISSTKETLQTFHNPKQLLYECAIALSEGNEEEGSSMINNLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANNAITEAVKDDMKIHIIDFDINQGSQYINLIQTLASRSSKPPHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNVVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVTDEIRKLIKVMYCDRYKIKEEMGALHFGWEDKNLIVASAWKLPR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01050 595 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 593 IPR005202 -
Cca03g01050 595 Coils Coil 144 164 - -
Cca03g01050 595 Pfam GRAS domain family 222 592 IPR005202 -
Cca03g01050 595 ProSiteProfiles GRAS family profile. 212 592 IPR005202 -
Cca03g01050 595 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 10 593 IPR030011 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01050 Cca-Chr3 25510977 25514623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01050 1 592 GRAS Transcription Factor Family AT1G21450 61.577 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g01050 GRAS 1.2e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01050 - - gmx:100788103 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01050 03 25510977 25514623 Cca03g01050 03 25510977 25514623 ECH
Cca05g00060 05 1322779 1326735 Cca03g01050 03 25510977 25514623 PCT