Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01048 ATGGTGCCTCCGGGGCCACCCACTCCCATTGGTGGTGCCCAGTCTGTTTCACCCTCTCTTTTGAGATCGAATTCAGGGATGTTAGGAAATCAAGGGGGTCCCATGCCGTCGCAGACGTCTTTCCCTTCACTTGTGTCGCCGCGCACTCAATTCAACAACATGAACATTCTAGGAAATATGTCCAATGTTAGTTCCATACTGAATCAGTCTTTCCCAATTGGAGTTCCAGGAAGTAGCCAGCGTGGAGGGATTGATACTGGAGCTGAAACAGATCCACTTTCCAGCGTTGGCAATGGAATGAGCTTCAATAATTCTTCGTCAACGTTTGTACAGTCAAATATAGTAAATGCTGGTTCCTCTGGCCAAGGTCAGGGTCAGCAATTTTCAAACCCTTCTAGTAACCAGTTGATGCCAGATCAACAGCATTCCCAACAGCTTGAACCTCAAAATTTCCAACATGGTCAGCAGTCAATGCAACAGTTCTCTGCTCCTCTGAATACACAGCATCAGCCACAGCCACAGCAGCATCTTCAATCAATTCGAGGAGGGATTGGTGGTATGGGACCAGTAAAGCTAGAGCCCCAAGTAAGCAATGATCAACTTGGACAGCAGCAGCAGTTGCAACCATTGAGGAATCTTGCTTCAGTGAAATTGGAACCACAACAAATGCAGACAATGAGAACATTGGGACCTGTTAAAATGGAGCCCCAACATTCTGATCAACCATTATTTTTGcagcaacagcaacaacaacaacagcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaGCTCCTTCACATGTCAAGTCAATCACCTCAGGCTGCTGCTGCCCAAATCAATCTTTTGCGCCACCACAGGCTTTTACAGTTGcaacaacaacaccagcagcaacaacTCTTGAAGGCAATGCCTCAGCAACGGTCCCAACTACCACAGCAATTTCAACAGCAGAATATGCCAATGAGATCTCCTGTGAAACCAGTGTATGAACCGGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAATATTGAGTTCTGGAGAAAGTTTGTTGCTGAATATTTTGCTCCTAATGCCAAGAAAAAATGGTGTGTTTCTATGTATGGAAGTGTAAGACAACCAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAGCCTGGCCGTGGATTTGAAGCAACTGTCGAGGTTCTTCCCCGGCTTTTCAAGATAAAGTATGAAAGTGGTACTTTGGAAGAACTTCTTTATGTTGACATGCCTCGCGAATATCATAATTCTTCTGGTCAGATTGTTCTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGTCAACTCCGAATAGTTTTCTCTCCAGACCTGAAGATATGTTCTTGGGAATTTTGTGCTCGGCGCCATGAGGAGCTCATCCCCAGGAGATTGTTAATACCACAGGTTAGTCAACTTGTAGCGGTTGCTCAAAAATACCAGGCTTTTACTCAAAATGCAACACCCAATGTATCTGTTCCAGAACTACAAAATAATTGCAATATGTTTGTTGCATCAGCCCGTCAGTTGGCTAAAGCCTTAGAAGTACCATTGGTTAATGATTTAGGATATACGAAGAGATATGTGCGCTGCCTACAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTACAGCAGAGAAACTGGAACTGGACCTATGGAGAGCTTAGCAAAATTCCCTCGGAGAACAAGTGGTTCATCGGGACCTCGTAGTCAAGCacaacagcatgaagaacaattacagcagcaacagcaacaacaaATGGTGGCTCATAACTCAAATGGTGATCAAAACTCAGTACAAGCTGCTGCCATGCAAATAGCTTCTAGCAATGGTATGGTTAGTGTAAATAACTCTGTCAATGCAGCATCCACATCTACCACCACAAGCACTATTGTTGGACTTCTCCACCAGAACTCGATGAATTCTAGACAACAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGCACCATCCTCTTCGAACAACCCCCCACAAGCATCTCACCCTGCTTTAACATCTGCCAATCACATGAGTACTACAAATTCACCAGCTAATATTTCCATGCAACAGCAACAGCAACAGCCATCTATTTCTGGTGAACCTGACCCTAGTGATGCCCAGAGCTCAGTCCAGAAAATCATACATGAGATGATGATGTCCTCCCAGATTAGTGGCGCAGGTGGAATGGTTGGCGTTGGATCTCTAGGAAATGACGTGAAGAATGTAAATGGTATTTTGCCAGTGGGTGCCAATACAGGCCTCAATGGTGGCAATGGCTTGGTGGGTAATGGTGCACTGAACAGTAATTCCGGCGTTGGGGTTGGTGGTTATGGCACAATGGGTCTTGGTCAATCCACTATGCCTAATGGAATCAGAACTGCTATGGTAAATAATTCAATCATGAACGGAAGGGGAGGAATGGCATCTCTTGCTCGCGATCAAGCTATGAATCATCAACAGGATTTGTCAAACCAACTACTTAGTGGGCTAGGGGCAGTAAATGGTTTTAATAATCTTCAATTTGATTGGAAACCTTCTCCTTGA 2670 0.4195 MVPPGPPTPIGGAQSVSPSLLRSNSGMLGNQGGPMPSQTSFPSLVSPRTQFNNMNILGNMSNVSSILNQSFPIGVPGSSQRGGIDTGAETDPLSSVGNGMSFNNSSSTFVQSNIVNAGSSGQGQGQQFSNPSSNQLMPDQQHSQQLEPQNFQHGQQSMQQFSAPLNTQHQPQPQQHLQSIRGGIGGMGPVKLEPQVSNDQLGQQQQLQPLRNLASVKLEPQQMQTMRTLGPVKMEPQHSDQPLFLQQQQQQQQQQQQQQQQQQQQQQQLLHMSSQSPQAAAAQINLLRHHRLLQLQQQHQQQQLLKAMPQQRSQLPQQFQQQNMPMRSPVKPVYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSVRQPTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLVAVAQKYQAFTQNATPNVSVPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSSGPRSQAQQHEEQLQQQQQQQMVAHNSNGDQNSVQAAAMQIASSNGMVSVNNSVNAASTSTTTSTIVGLLHQNSMNSRQQNSMNNASSPYGAPSSSNNPPQASHPALTSANHMSTTNSPANISMQQQQQQPSISGEPDPSDAQSSVQKIIHEMMMSSQISGAGGMVGVGSLGNDVKNVNGILPVGANTGLNGGNGLVGNGALNSNSGVGVGGYGTMGLGQSTMPNGIRTAMVNNSIMNGRGGMASLARDQAMNHQQDLSNQLLSGLGAVNGFNNLQFDWKPSP 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01048 889 PANTHER LIM DOMAIN-BINDING PROTEIN 698 888 IPR029005 -
Cca03g01048 889 MobiDBLite consensus disorder prediction 600 639 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 12 46 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 115 205 - -
Cca03g01048 889 Coils Coil 245 268 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 1 46 - -
Cca03g01048 889 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 698 888 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 77 100 - -
Cca03g01048 889 PANTHER LIM DOMAIN-BINDING PROTEIN 1 698 IPR029005 -
Cca03g01048 889 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 698 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 683 751 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 586 639 - -
Cca03g01048 889 Pfam LIM-domain binding protein 342 596 IPR029005 -
Cca03g01048 889 MobiDBLite consensus disorder prediction 233 252 - -
Cca03g01048 889 MobiDBLite consensus disorder prediction 115 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01048 Cca-Chr3 25493236 25500905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01048 1 885 C2H2 Transcription Factor Family AT1G43850 59.958 0.0 766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01048 03 25493236 25500905 Cca03g01048 03 25493236 25500905 ECH