Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01040 ATGTTATTAAAAGCCGCGGTTGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCACCACCACAGGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCCCTTTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGATCATGCCCTCCCTGTGTTTACCGGAGAGTGTGGGGATTGTTCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTGCTCAGGATCAACACTGATCGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAAGGAAAGCCTATTTACCATTTTGTTGGTACCTCTACATTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCCAAAGTCAACCCTGAAGCCCCACTTGACAAAATCTGTGTTCTCAGTTGTGGAATCTGCACAGGTCTTGGGGCCACTGTCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATCTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCTAGAATTATTGGGGTTGATTTAGTTTCCAGCCGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGATCATGACAAGCCTGTACAACAGGTGATTGCTGAAATGACAAATGGGGGTGTGGATCGTGCTGTGGAATGTACTGGCAGCATTCAGGCCATGATCTCAGCATTCGAATGTGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTTCCAAACAAAGATGATGCATTCAAAACTCATCCAATGAATTTCTTGAATGAGAGGACTCTCAAGGGTACCTTCTATGGTAACTACAAACCCCGCACTGATCTACCTGCTGTTGTGGAGAAGTACATGAGTGGGGAATTGGAACTGGATAAATTCATCACTCACACAGTTGGATTCTCAGAGATCAACAAAGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGTATGGGGGAGTAA 1119 0.4638 MLLKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGDCSHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGKPIYHFVGTSTFSEYTVVHAGCVAKVNPEAPLDKICVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPAVVEKYMSGELELDKFITHTVGFSEINKAFDYMLKGESIRCIIRMGE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01040 372 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 61 75 IPR002328 GO:0008270|GO:0016491
Cca03g01040 372 Gene3D - 11 362 - -
Cca03g01040 372 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 370 - -
Cca03g01040 372 CDD alcohol_DH_plants 4 369 - -
Cca03g01040 372 PANTHER ALCOHOL DEHYDROGENASE 4 370 - -
Cca03g01040 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 161 335 IPR036291 -
Cca03g01040 372 SUPERFAMILY GroES-like 2 179 IPR011032 -
Cca03g01040 372 Pfam Alcohol dehydrogenase GroES-like domain 28 155 IPR013154 -
Cca03g01040 372 Gene3D - 175 313 - -
Cca03g01040 372 Pfam Zinc-binding dehydrogenase 198 325 IPR013149 -
Cca03g01040 372 SUPERFAMILY GroES-like 320 369 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01040 Cca-Chr3 25353206 25356075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01040 29 319 Monolignol Biosynthesis Gene Families AT1G72680 25.939 4.40e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01040 K18857 - gmx:100783858 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01040 03 25353206 25356075 Cca03g01040 03 25353206 25356075 ECH