Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01033 ATGGCGAGTCGCCTGAAGGAAGACGAGAAGAATGAGCACGTGATTCGAGGTCTTCTCAAGCTTCAACCTAATCGCAGATGCATTAACTGCAACAGTCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACATCGGGAATTCAATCATCGAGTAAAAAGATTTATTGGAGAAAAGCCCAGTGACAAACCACCAAGAGTCAAAGCAGTTGACAAAGATGATTTCTATAAAGGAGGAGGATCTAAAAGCCCTCCCTATGAGGATGCATATGAACGTCGTTATAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAGGAGAAGTCTTGGTCGTCCTCCAATAATTAATGATTGGCGCCGTGAAGATCGTAGAATATCAGATGGAGATTATAAGGTGGAAAGACAATCTCCTGAGCGAGCCAAAGATGTGAGTTCTTCAAGCCCACCAGTGGTCCGATCTATTAGAGAAATATTGGGAGAAAATGTAGTACCTCTTCGGATAAGTGAACCACCCAAATCAAACAGTGGAAGACCTGCTGATAGTTCAGCATTGAAACAGAGAACTGCATCTTCCAGTAACTTAACATCTGTCAACGAAAACCTAGTAGATGTTAAACTTGAGACGACTAAGAGCCTTATTGATTTTGATGTTGATCCTGAACTTCCGGTGGCTCCATCAATTCCTCAAGCCCAACAATCTACTGTGCCGCAACCTGTTGTGCAACCAGCAAATTCCGGCAATGACAATTGGGCCTCTTTTGATGTTGCTCCTGGGGCTAAAGCAACTCCAAGCTCCTCAAATTTCAATTCACTTGAATCAGTGTTATCCGAATTGTCTGTGCCAGCATCTTTACCTGCTCAATTTTCTGGAGTCCAAGTACGTATTCCAGCACCATCTCTTACTTCTACTTCTAGAACCGCAAATGTTACTGGTTTCTTAGCTTTTCCACCTAAGCCGTGTTTGTAG 1029 0.4286 MASRLKEDEKNEHVIRGLLKLQPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFNHRVKRFIGEKPSDKPPRVKAVDKDDFYKGGGSKSPPYEDAYERRYSDRSSPGGRSPGYDQESRQYGDYRRSLGRPPIINDWRREDRRISDGDYKVERQSPERAKDVSSSSPPVVRSIREILGENVVPLRISEPPKSNSGRPADSSALKQRTASSSNLTSVNENLVDVKLETTKSLIDFDVDPELPVAPSIPQAQQSTVPQPVVQPANSGNDNWASFDVAPGAKATPSSSNFNSLESVLSELSVPASLPAQFSGVQVRIPAPSLTSTSRTANVTGFLAFPPKPCL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01033 342 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 84 IPR001164 GO:0005096
Cca03g01033 342 MobiDBLite consensus disorder prediction 66 87 - -
Cca03g01033 342 PANTHER ARF GTPASE ACTIVATOR 1 62 - -
Cca03g01033 342 PANTHER ARF GTPASE ACTIVATOR 62 337 - -
Cca03g01033 342 MobiDBLite consensus disorder prediction 186 215 - -
Cca03g01033 342 Gene3D Arf GTPase activating protein 1 86 IPR038508 -
Cca03g01033 342 MobiDBLite consensus disorder prediction 150 172 - -
Cca03g01033 342 SUPERFAMILY ArfGap/RecO-like zinc finger 11 63 IPR037278 -
Cca03g01033 342 PANTHER ARFGAP/RECO-RELATED 1 62 IPR044820 GO:0005096
Cca03g01033 342 Pfam Putative GTPase activating protein for Arf 13 62 IPR001164 GO:0005096
Cca03g01033 342 MobiDBLite consensus disorder prediction 66 134 - -
Cca03g01033 342 PANTHER ARFGAP/RECO-RELATED 62 337 IPR044820 GO:0005096
Cca03g01033 342 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01033 Cca-Chr3 25262194 25263396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01033 15 121 C2H2 Transcription Factor Family AT4G21160 27.273 3.00e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01033 - - gmx:102669541 461.455