Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01030 ATGAAGGACCTGGGCTTTGTTGCAGTGATGTTGGCGGTAGAGTTGATGGACGTGATTGCCAACACTATAAGCAAAGCAGCCATGAAGAAGGGCATGAATGACTTTGTGTTTGTCATGTACTCCAATGCCTTCGGAACATGCTTTCTCTTTCTCATAACTTTAATCTTTTATAGGAAAAGAACACTTCCTCCACTCTCCTATAAAATCATTGGCCTGTTATTTGTTGTTGGCTTCCTCAGGTACTTATTTACTTCACTTTCAATCTCTGTTCATGAGGGACTTATTAATTTCTTGCTTCTTGCTTCTTGCAGTTGCAGTAACCAGATGCTCAAGTTTTTTGGCATAGATTACAGCTCTCCTACTTTGTCCTCAGCAATGTCTGATTTGATCCCGGCCTTTACCTTCATACTCGCCATCATCTTCAGGATGGAAAAATTGGATTGGAAAACTAATAGCAGTTGGGCAAAGTCTATTGGCACATTGGTAACAATCTCTGGGGCCTTGATAATGTCGGTGTACAAAGGGCAGGCAGTGATAAATAATGATCCCTCTCTTAAATTGTTCCCTCGAAAACTTGCCTCGTCTATGGAATTTGACTGGGTATTTGGGGCAGTGTTGCTTGCGGCTCATAGCTTTTGTCTCTCAATTAACTTTATAGTTTTGACACGGATAGTCAGAGAATACCCTTCAGAGTTGGTGGTGATGCTCATTCGCACTGCATTAGCCTCTATACTATCTGTTCCTGCTGCGATGCTTTCAGTAAAGGATCTTAAAGCATTGAGACTGGAATTTAATATGGAGTTGATAGCCATTGGACTTTCTGCAATTTTCGTCTTATCCTTTGGAAGTGTCATCGCTACCTGGACCATAGGAAAGAAAGGCCCTGTTTTTGTTGCAATGTTTACTCCACTTACAATACTCTTTGCAGTCATCTTGGGAATTACTTTTCTTGGGGACTCTCTCTATATTGGAAGTGTGATCGGAGCAATCATGGTAGTTATTGGCTTTTATGCTGTTATATGGGGGAAAACCCGAGAGAATGTGGAGGAAGATTGTACAGTGTACAGCATCGAATCATACTCTACTGAGGTCCCTGTTTTGCTGAACACGAGAATGGGGAATAAAGCTTCAAGAACTGATATTTATAGTCTGCTTGAAGGCCAAGAATGA 1170 0.4137 MKDLGFVAVMLAVELMDVIANTISKAAMKKGMNDFVFVMYSNAFGTCFLFLITLIFYRKRTLPPLSYKIIGLLFVVGFLRYLFTSLSISVHEGLINFLLLASCSCSNQMLKFFGIDYSSPTLSSAMSDLIPAFTFILAIIFRMEKLDWKTNSSWAKSIGTLVTISGALIMSVYKGQAVINNDPSLKLFPRKLASSMEFDWVFGAVLLAAHSFCLSINFIVLTRIVREYPSELVVMLIRTALASILSVPAAMLSVKDLKALRLEFNMELIAIGLSAIFVLSFGSVIATWTIGKKGPVFVAMFTPLTILFAVILGITFLGDSLYIGSVIGAIMVVIGFYAVIWGKTRENVEEDCTVYSIESYSTEVPVLLNTRMGNKASRTDIYSLLEGQE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01030 389 PANTHER WAT1-RELATED PROTEIN 94 350 - -
Cca03g01030 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 345 - -
Cca03g01030 389 Pfam EamA-like transporter family 202 340 IPR000620 GO:0016020|GO:0016021
Cca03g01030 389 PANTHER WAT1-RELATED PROTEIN 8 82 IPR030184 GO:0016021|GO:0022857
Cca03g01030 389 PANTHER WAT1-RELATED PROTEIN 94 350 IPR030184 GO:0016021|GO:0022857
Cca03g01030 389 PANTHER WAT1-RELATED PROTEIN 8 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01030 Cca-Chr3 25162608 25176895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01030 2 347 Nodulin-like Gene Family AT5G40230 38.764 2.82e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01030 - - gsj:114410339 536.954