Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01017 ATGTTCTTTCTCGTGCTCATTATTCCTTTTCACTGCTTTCATTCCATTTTGAGCTTCATTCTCCATAGGTGGGTGTTTTTTGATTTATTGCTTCAGTTTGAGGACTTGCTTGGTGTTTGTGTCTTTCTTGATTATTACTTAGAAACAAGTCTAAGCAAAGATGAGGATTATGATAAAGGGCGGTCTCGCTGGTATGAATGGCTCGATCCTTCCATCAAAAAGACCGAGTGGACGAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCAATTGTGGGCCGTACACCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTAAAGGATGAGAACTATGAACCTGGTGATGATCCCCGAAAACTGCGTCCTGGGGAGATTGATCCAAACCCGGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGAAAGAAAGCCAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGACTTGCTTCTTTACAGAAAAAAAGAGAATTGAAGGCTGCCGGAATTGATGTTAGGCAGCGGAAAAGGAAAAGAAAAGGAATAGACTACAATGCCGAAATTCCATTGGAAAAAAGGCCACCTCCGGGGTTTTTTGATGTTACAGATGAAGATAGACCAGTGGAACAACCCAAGTTTCCTATTACAATTGAAGAACTTGAAGGAAAAAGAAGGGTCGATATTGAGACACAATTAAGAAAGCAGGACATTGCCAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCCATACTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGGTCAAAACTGATGCTTCCACCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAAGCTGGGTTATGCCAGTGACGTTGCAGGGAATCAGGAACTTGCTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCACAGATGCCTGGCCAAGGAATGACTCCTTTACGAACGCCTCAGAGAACACCAACTGGTAAGGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGTTGAGGGAGTCTCAAACACCATTATTGGGAGGAGAGAACCCGGAGTTACATCCTTCTGATTTTTCTGGGGTTACTCCTAAGAGAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGTGCAGGACTCACTCCAAGAACTGGCATGACACCAGCAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGATATGAATATGCATGACAGCAGTAAACTTGAGCTACAAAGACAAGCTGATATGAAAAGAAGTTTGCGTTCTGGTTTAGGAAGCCTTCCACAGCCCAAAAATGAATACCAAATAGTGATGCAACCGGTTCCAGAAGACAGTGAAGAGCCAGAGGTGAATATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCCGAAGAAGAGGCAAGGCAGCAGGCCTTACTTAGAAAAAGATCAAAAGTTCTTCAAAGAGAACTTCCTAGGCCTCCTGCTGCATCATTGGAGCTTATAAGAAATTCTTTGATAAGAGCTGACGAGGACAAGAGTTCCTTTGTTCCACCTACCTCTATTGAGCAAGCTGATGAAATGATTAGAAGGGAACTTCTAACTTTGCTGCAGCATGACAATGCTAAGTATCCACTTGACGAGAAAGTGACCAAGGAGAAAAAGAAAGGAGCCAAGCGTGCCTTAAATGGGGCTGATGTCCCTGTGATAGAAAATTTTCTGGAAGATGAAATAAAAAATGCTGATAAGTTGATAAAGGAAGAGGCCCAGTATCTTTGTGCAGCAATGGGACATGAAAGTGAACCCCTTGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACTCGTAATGCCTATGGGCTCTCAAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAGTGAATTTGAGAATGTGAGAAACAAATTGGATGATGGTAAGGAGAAGATGATACGGGTGGAGAAGAAGGTGATGGTTCTCACACAAGGCTATGAGTTGAGAGCAAAAAAAAGCCTATGGCCGCAAATTGAGGCCACTTTAAAGCAGATGGACGTAGCTGCAACAGAGTTCGAATGCTTTAAAGTTTTGCAAAAGCAGGAACAATTAGCAGCATCACATAGGATAAACAATCTGTGGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACCTTGCAAACTAGGTATGGGAGTCTAATTGAAGAGCTGGAAAAGATACAAAATATCAAGGACCAATATAGATTACAAGCACAACAGCAAGAAGAAATGGAGGCAAACAACCATGCTCGTGAGTCAATTGAGACCAAGGCCGATGAAACTGATGTAGAGTGTACAGAGAATCGTGAAGCTTCACCTCCCTCAGTAGAGCTTGGACATGCTCTAGCAGCTGAGTCATCTCATGGTGGAACTGCTGATCAGCAAGTAGATATTGTGCAAGACCATATTACTTCTAGCCCCAGTCATGACATTGACGTGGATTCTGACAAAATGCAAATAGCACACGACACCTCTGTGAATTTGGCAAATGGTACACCTGCTGCAGAGAATGTCGATGAGAAAGTGGAAGATATTTGCTTTAGCAGATACGGGTACAGAACAATTTTTTACCCAACAGGACAGTTACAGATGCATGATGTTGATTCTCGTTGGGTCCACAATGTTCCAAGAATTTTAGGCTTCTCCATTCAGTAG 2916 0.4318 MFFLVLIIPFHCFHSILSFILHRWVFFDLLLQFEDLLGVCVFLDYYLETSLSKDEDYDKGRSRWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDVRQRKRKRKGIDYNAEIPLEKRPPPGFFDVTDEDRPVEQPKFPITIEELEGKRRVDIETQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDVAGNQELAEGSGATRALLANYAQMPGQGMTPLRTPQRTPTGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNPMLTPSATPGGAGLTPRTGMTPARDGFSFSMTPKGTPLRDELHINEDMNMHDSSKLELQRQADMKRSLRSGLGSLPQPKNEYQIVMQPVPEDSEEPEVNIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLIRADEDKSSFVPPTSIEQADEMIRRELLTLLQHDNAKYPLDEKVTKEKKKGAKRALNGADVPVIENFLEDEIKNADKLIKEEAQYLCAAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQSEFENVRNKLDDGKEKMIRVEKKVMVLTQGYELRAKKSLWPQIEATLKQMDVAATEFECFKVLQKQEQLAASHRINNLWAEVQKQKELEKTLQTRYGSLIEELEKIQNIKDQYRLQAQQQEEMEANNHARESIETKADETDVECTENREASPPSVELGHALAAESSHGGTADQQVDIVQDHITSSPSHDIDVDSDKMQIAHDTSVNLANGTPAAENVDEKVEDICFSRYGYRTIFYPTGQLQMHDVDSRWVHNVPRILGFSIQ 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01017 971 MobiDBLite consensus disorder prediction 395 461 - -
Cca03g01017 971 Coils Coil 704 731 - -
Cca03g01017 971 SUPERFAMILY Homeodomain-like 61 121 IPR009057 -
Cca03g01017 971 Coils Coil 182 202 - -
Cca03g01017 971 SMART sant 73 120 IPR001005 -
Cca03g01017 971 MobiDBLite consensus disorder prediction 128 164 - -
Cca03g01017 971 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 62 860 - -
Cca03g01017 971 MobiDBLite consensus disorder prediction 414 428 - -
Cca03g01017 971 Pfam Myb-like DNA-binding domain 77 126 - -
Cca03g01017 971 Gene3D - 72 129 - -
Cca03g01017 971 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 122 IPR017930 -
Cca03g01017 971 ProSiteProfiles Myb-like domain profile. 69 118 IPR001005 -
Cca03g01017 971 Coils Coil 811 834 - -
Cca03g01017 971 CDD SANT_CDC5_II 70 121 - -
Cca03g01017 971 Pfam pre-mRNA splicing factor component 421 669 IPR021786 -
Cca03g01017 971 PANTHER - 62 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01017 Cca-Chr3 24931421 24939789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01017 61 850 MYB-Related Transcription Factor Family AT1G09770 73.929 0.0 1138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g01017 Myb_Cef 7.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01017 K12860 - gmx:100790369 1495.33