Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01009 ATGGACAAGAAACTAGCCATCTTGTTCATTTTTTCAGCAGCCTTGGTGATGGAAGCAGTTTTTGATAGTGTTGGAGCTGAGCCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTGACAACATGAATCACTCTCCTCATGTCAATTGGGATGAGAACACTTCAGTTTGCCAAGGCTGGAGAGGAGTGACTTGCAATTCTGACAAGTCAAGAGTTATAGCCCTTCGATTGCCAGGGGCTGGTTTGAGTGGTTCAATCCCTCCCAACACTCTCAGTCGCCTCTCAGCACTTGAGATTGTGAGTCTTAGATCAAATGGTATAACAGGCCCTTTCCCTGATGGTTTCTCTGAGCTGAAGAATTTGACCAGCCTCTATCTCCAATTTAACAAGTTTTCTGGGCCACTACCATTGGATTTTTCAGTTTGGAATAGCCTTAGTGTTGTCAATTTTTCCAACAATTCTTTCAATGGAAGCATCCCCTTTTCAATTTCTAATCTGACTCATCTCACCTCATTAGACCTTGCCAATAACTCTCTCTCAGGTGAGATTCCTGATCTCAATATTCCTAGCCTGCAGGACCTGAATTTAGCCAACAATAACCTTAGTGGGATTGTTCCTAAATCCCTAATCAGATTTCCTAGTTCGGCCTTTGCTGGTAACAATCTTTCATCAGCAAATGCACTCCCTCCAGCTTTTCCTGTGAAGCCACCGGTTGCTCATACGGCAAAGAAATCCAAAGGACTCAGTGAACCTGCATTGTTGGGCATCATCATCGGTGGTTGTGCGCTGGGGTTTGCTGTGATTGCTGGTTTCATGATTGTGTGCTGCTATCAGAATGCAGATGTGGATGTGCAACCAGTGAAATCACAGAAAAAACAAGCCTCTGTGAAGACAGATTCTTCAGGAAGTCAAGACAAAAACAACAAAATTGTTTTCTTTGAGGGTTGCAATTTTGCATTTGATCTAGAGGACCTGTTGAGAGCATCTGCTGAGATTCTTGGAAAGGGCACCTTTGGTATGACATATAGGGCTGCTCTAGAGGATGCAACCACTGTGGTGGTCAAGAGATTGAAGGAGGTCACAGTTGGAAAACGAGAATTTGAACAGCAGATGGAGATTGTGGGGAAAATTAAGCACGACAATGTGGATGCAGTGAGGGCATATTACTATTCAAAGGAGGAGAAACTCATAGTATATGATTATTATCAACAAGGCAGCGTTTCTGCAATGTTACATGGAAAAGGAGGGGAAGGCAGAAATTCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATAGGTGCAGCAAGAGGCATTGCTCACATCCATGCTCAACATGGAGGTAAACTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATATGGATGCATATCTGATATTGGCTTGGCAACATTGATGAGTCCAATACCCGCTCCATCAATGAGAGCAACAGGATACCGTGCACCGGAAGTAACAGACACGCGCAAAACAACTCATGCATCTGATGTGTACAGTTTTGGGGTTCTTCTACTTGAGCTTCTGACAGGGAAATCTCCTGTAAGCAGCACAGAAGGGGACCAGGTTGTCCACTTGGTTCGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCAAACATAGAGGAAGAAATGGTGGGGATGCTGCAAATAGGGATGGCTTGTGCTGCAAGAATACCGGATCAGAGACCAAAGATGCCTGAAGTGGAGAGAATGATGGAGGAGATTCGCCGCGTAAATACACCAAATCTACCATCCACTGAGTCTAGATCAGAAGTTTCTACGCCAACCCCTCGTGCAGTTGGCACACCTACTTCTGTTCAACAATGA 1896 0.4436 MDKKLAILFIFSAALVMEAVFDSVGAEPVEDKQALLDFLDNMNHSPHVNWDENTSVCQGWRGVTCNSDKSRVIALRLPGAGLSGSIPPNTLSRLSALEIVSLRSNGITGPFPDGFSELKNLTSLYLQFNKFSGPLPLDFSVWNSLSVVNFSNNSFNGSIPFSISNLTHLTSLDLANNSLSGEIPDLNIPSLQDLNLANNNLSGIVPKSLIRFPSSAFAGNNLSSANALPPAFPVKPPVAHTAKKSKGLSEPALLGIIIGGCALGFAVIAGFMIVCCYQNADVDVQPVKSQKKQASVKTDSSGSQDKNNKIVFFEGCNFAFDLEDLLRASAEILGKGTFGMTYRAALEDATTVVVKRLKEVTVGKREFEQQMEIVGKIKHDNVDAVRAYYYSKEEKLIVYDYYQQGSVSAMLHGKGGEGRNSLDWDSRLRIAIGAARGIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCISDIGLATLMSPIPAPSMRATGYRAPEVTDTRKTTHASDVYSFGVLLLELLTGKSPVSSTEGDQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVGMLQIGMACAARIPDQRPKMPEVERMMEEIRRVNTPNLPSTESRSEVSTPTPRAVGTPTSVQQ 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01009 631 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Cca03g01009 631 Gene3D Ribonuclease Inhibitor 29 232 IPR032675 -
Cca03g01009 631 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Cca03g01009 631 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Cca03g01009 631 PANTHER LRR RECEPTOR-LIKE KINASE 18 624 - -
Cca03g01009 631 Pfam Protein tyrosine and serine/threonine kinase 331 556 IPR001245 GO:0004672|GO:0006468
Cca03g01009 631 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Cca03g01009 631 MobiDBLite consensus disorder prediction 602 631 - -
Cca03g01009 631 ProSitePatterns Protein kinases ATP-binding region signature. 333 364 IPR017441 GO:0005524
Cca03g01009 631 SUPERFAMILY L domain-like 46 212 - -
Cca03g01009 631 MobiDBLite consensus disorder prediction 596 631 - -
Cca03g01009 631 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g01009 631 PANTHER OS05G0588300 PROTEIN 18 624 - -
Cca03g01009 631 Pfam Leucine rich repeat 85 131 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01009 Cca-Chr3 24807595 24811257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01009 26 619 Receptor kinase-like Gene Family AT4G23740 57.003 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca03g01009 PK_Tyr_Ser-Thr 6.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01009 - - gmx:100813065 1053.89