Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01006 ATGGAAGAGAGTATCCTATGCAAAGAGAGAGTCACCAAGAAGGTCCTCTCCCCCAACGACTCCCAAACCAATTCAAGAATAGTGCGCATATCCTACACTGATCCAGACGCCACCGACTCCTCCAGCGACGACGAAGGGACCCCCGTACTCCGCCACAGAATGAAGCGATTCGTCAACCAGATTCAAATACAAACCGCCGCCTCCAACTCCCGGAAAAGGCCCGCCGCAGACACCTCCTCTTGCCGTCGCCAAGTCAAGCTCCACGGCGGCAAGAAGTTCCGCGGCGTCCGCCAACGCCCCTGGGGGAAATGGGCGGCGGAGATTCGAGATCCGGGCAGGAAGGTTCGTCTCTGGTTGGGAACCTACGACACGGCGGAGGAGGCGGCCATGGTCTACGACAATGCCGCCATCAGGCTTCGAGGCCCCGACGCGTTGACGAACTTCGTAACGGCGCCGGCAAGGGAGGCAGCAGGCATGAAAATGGGCGCGGTGAAGGAAGAAGCGTCCGGTTGCGGGTACGAGTGGAGCGAGGATAACTGCGAGGAGCAGCACAACCTGTCCTCTCCCACTTCGGTGCTCCATTTCCGGAGCGAGGAAAGGTCGGAGTCTGAGAAATGTGAACAGGGGGAGGGGGAGACCGAAGCGACCTTGTTCGACGAGACGGGTGAGTTCTTCTCTGTGGACAACATGCCTGCTTGGGATGACGTCTTCAATTTCGAAGCTCCCCAGTACCCTCTCTTGTTCCAAGACGATGAGCCTCTTCACCCGGACTCCCATTTGTTGGACCAAACGCTGCCCTTTTCCCCGGAACAAGCTTTCACTCACAGTAGCATTCTTCTCGCCGACTCCCTCATAGATTTCGACAAAGCATGTTCTCCATCCTCCACGTCCCAACTCGACCCTTACGATTACTTCCAAGACATTTTGTTCGCCTCAGGCTCAGACCCTCTTGTCCGTCTTTGA 963 0.5711 MEESILCKERVTKKVLSPNDSQTNSRIVRISYTDPDATDSSSDDEGTPVLRHRMKRFVNQIQIQTAASNSRKRPAADTSSCRRQVKLHGGKKFRGVRQRPWGKWAAEIRDPGRKVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTAPAREAAGMKMGAVKEEASGCGYEWSEDNCEEQHNLSSPTSVLHFRSEERSESEKCEQGEGETEATLFDETGEFFSVDNMPAWDDVFNFEAPQYPLLFQDDEPLHPDSHLLDQTLPFSPEQAFTHSSILLADSLIDFDKACSPSSTSQLDPYDYFQDILFASGSDPLVRL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01006 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 310 - -
Cca03g01006 320 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Cca03g01006 320 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Cca03g01006 320 MobiDBLite consensus disorder prediction 65 84 - -
Cca03g01006 320 MobiDBLite consensus disorder prediction 195 212 - -
Cca03g01006 320 SUPERFAMILY DNA-binding domain 92 149 IPR016177 GO:0003677
Cca03g01006 320 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Cca03g01006 320 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Cca03g01006 320 CDD AP2 91 148 IPR001471 GO:0003700|GO:0006355
Cca03g01006 320 Gene3D AP2/ERF domain 91 150 IPR036955 GO:0003700|GO:0006355
Cca03g01006 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 9 310 - -
Cca03g01006 320 MobiDBLite consensus disorder prediction 183 213 - -
Cca03g01006 320 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01006 Cca-Chr3 24748405 24750100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01006 24 197 AP2-EREBP Transcription Factor Family AT4G27950 49.457 5.03e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca03g01006 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01006 - - gmx:100807598 380.178