Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01003 ATGGATGACACCTTATGCGACATTTTTGACGATAAAGAGTTTGGCGGGGACGAACTCTTTGCCATTTTAGAGAGCCTCGAATCTGACTTCACCGATTTCCCTCCCATTAACCAAGCTGTTGCTATCTCAAAGGAGACCAACGAGGATGTTTCCAGATTGGCCTCCCAAAAGTCAACCTCTTCAAGTGCTGCTCAAGATTCCGAAACTGAGCTTGAAACCTCGCCCAAAACAAAGAGACAGAAGCTTACCACCCCAGAGGAAGCAAATCCCGATGGACAACAAAAGATGTCTCACATTACCGTTGAACGCAACAGGAGAAAGCAAATGAATGAACACTTGTCTGTCTTGAAGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTTCTGCAAGCCCTGGAGGCCAAGAAACAAAGAAAAGTTTACAGCGAAGTACTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTCGGAAGCCACCTCTGAGCCCGAGACTAAACTTGCCCATAAGCCCAAGAACTCCACAACCAGGAAGCCCTTATAGGCCAAGGTTGCAGCAAGGCTACAACAACATTATTTCACCAACCATGTCGAACTCTCTGGACCCTTCTCCCACTACTTCTTCCGCTTCCTCCATGAACGACAACATCAACGAGCTTGTTGCGAATTCGAAATCAGCTTCTGCTGACGTGGAGGTAAAGTTTTCAGGTCCGCACGTTCTTCTGAAAACGGTGTCGCAACGAATTCCAGGTCAGGCTCTGAAGATAATAACGGCACTTGAAGATCTTGCGCTCGAAATCCTCCATGTCAATATTAACTCTGCTGCTGATGATACCATGCTCAACTCGTTCACTATCAAGATTGGAATTGAATGCCAACTGAGTGCGGAAGAACTTGCTCAACAAATCCAGCAAACATTCTGCTAA 993 0.4642 MDDTLCDIFDDKEFGGDELFAILESLESDFTDFPPINQAVAISKETNEDVSRLASQKSTSSSAAQDSETELETSPKTKRQKLTTPEEANPDGQQKMSHITVERNRRKQMNEHLSVLKSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNIISPTMSNSLDPSPTTSSASSMNDNINELVANSKSASADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINSAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01003 330 MobiDBLite consensus disorder prediction 44 97 - -
Cca03g01003 330 MobiDBLite consensus disorder prediction 44 70 - -
Cca03g01003 330 MobiDBLite consensus disorder prediction 166 235 - -
Cca03g01003 330 PANTHER TRANSCRIPTION FACTOR FAMA 8 330 IPR044283 GO:0003700|GO:0010052
Cca03g01003 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 167 IPR036638 GO:0046983
Cca03g01003 330 Pfam Helix-loop-helix DNA-binding domain 94 145 IPR011598 GO:0046983
Cca03g01003 330 MobiDBLite consensus disorder prediction 172 201 - -
Cca03g01003 330 MobiDBLite consensus disorder prediction 202 235 - -
Cca03g01003 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 144 IPR011598 GO:0046983
Cca03g01003 330 CDD bHLH_AtFAMA_like 96 167 - -
Cca03g01003 330 Gene3D - 85 166 IPR036638 GO:0046983
Cca03g01003 330 MobiDBLite consensus disorder prediction 71 85 - -
Cca03g01003 330 SMART finulus 99 150 IPR011598 GO:0046983
Cca03g01003 330 Coils Coil 137 157 - -
Cca03g01003 330 PANTHER - 8 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01003 Cca-Chr3 24654255 24658563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01003 6 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.273 3.38e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g01003 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01003 K20558 - gmx:100777437 521.546