Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01002 ATGGGAGAACCAAATAGCATCATACATGAGCTACTACAAGGTTTGGAGCTGGCAAGGCAGCTCCAAGTGTATCTCCACATGCCTTCTTCCTCCCAAGAAACCCGTGACCTCTTGATCCAGCAGATCATATCCACTTTTGAAAAGGCACTTCAAATGGCAAATTGGAAAGGACCAGTGCCCgccgctgctgctgctgctgctgAGTCCTCACAACATCCCCCAGGGATTCCAATACGAATGTCAGACTCACCTTTGAGCACGAGTCCCCGCAGTGAAGACTCTGATAGAGATTTCAAGGACCAGGACCAGAATGCTTTCAAAAAGAGAAACAGTTTGCCAAGATGGACAAAACAGATTCGAGTTACACCAGGAATGGGGGTGGAGGGGCCTCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATCCTAGGTGCCAGGTACCCGAGGGGCTATTACAGATGTACCCACAGAAACGTTCAAGGCTGCGTGGCCACAAAGCATGTGCAAAGATCCGATGAAGACCCCACTATTTTTGAGATCACCTACCGAGGGAGGCACACATGCACAATGGCCAACAACGTTGGTGCTTCATCAGTTCCACTAGAAAACCAAGAACCAAGTTTGAACAACACAAACCCTCAGCAGCAGCAGAATATCCTGCAGAGCCTTGAGCAGCATCCAAACGAACTACTTATGAGCCTTCGGAGAGGGTTGAAAGTCCAAACAGAGAACCTTGATTCCCCAGACCAATCATTCCGTTTCCCTTCCTCAACAGACATCAAAATTGAAAGCCAGGTTTTCCCATCCCCTGTGATTGAAAACACCTATGCTGAAAAATTCAGTTCCCCTTCCTACATGTCCCCTGCTACATCGGGAATAAGCCAATTTTCGGTTTCTCCAAGTGGGGTTAACAGCTTTGGAGGGAACCCAAATTTGGCAAGTTCGGGGTCTCAGATCAATGACATGATCCCTGCCACTACTTCAGCTCCAAACTCATCAACCGTTGGTTTAGACTTCCCTTTTGACCAGTTTGAATTTGATGGTCAGAACTTCACATTCGATAACCCACGATTTTTCTCTTGA 1092 0.4588 MGEPNSIIHELLQGLELARQLQVYLHMPSSSQETRDLLIQQIISTFEKALQMANWKGPVPAAAAAAAESSQHPPGIPIRMSDSPLSTSPRSEDSDRDFKDQDQNAFKKRNSLPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGARYPRGYYRCTHRNVQGCVATKHVQRSDEDPTIFEITYRGRHTCTMANNVGASSVPLENQEPSLNNTNPQQQQNILQSLEQHPNELLMSLRRGLKVQTENLDSPDQSFRFPSSTDIKIESQVFPSPVIENTYAEKFSSPSYMSPATSGISQFSVSPSGVNSFGGNPNLASSGSQINDMIPATTSAPNSSTVGLDFPFDQFEFDGQNFTFDNPRFFS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01002 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 3 361 - -
Cca03g01002 363 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01002 363 MobiDBLite consensus disorder prediction 89 107 - -
Cca03g01002 363 Gene3D WRKY domain 124 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01002 363 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 361 IPR044810 GO:0003700
Cca03g01002 363 Pfam WRKY DNA -binding domain 132 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g01002 363 MobiDBLite consensus disorder prediction 64 114 - -
Cca03g01002 363 SUPERFAMILY WRKY DNA-binding domain 130 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g01002 363 ProSiteProfiles WRKY domain profile. 126 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01002 Cca-Chr3 24646616 24649108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01002 3 260 WRKY Transcription Factor Family AT4G23810 37.676 1.77e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g01002 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01002 - - gmx:100776906 580.482