Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00995 ATGAAATATATATTTCTTTTCCTTGTCATTTTCAAGATTATCAAGAGGAGATTGACAAAGTTACAAGAGACTATGGGATTTCAAACATCAAATAGTACTAAACGGATAGCACAGTCAATTTTCAAAGCAAAGGAGGACTCAATTGATGCACATGAAAACTCATTAATTCAAAGGACCACAAAGAACTTCATTGATAATACTCAAACCAATACCACCGAATATGATTCATGGGTGGTAAGGTACCCTTCTGCATTGAACTCGTTTGATACACTTATGAAAGCAGCCACTGAAAAGAGGATCATCGTTTTTTTGGACTACGATGGTACCTTATCACCAATTGTAAATGATCCTGATCGTGCTTTTATGTCTGATGAGATGCGTGCAACAGTATTTGAAGTTGCTACTTATTTTCCTACAGCAATAATTAGTGGAAGAAGTAGAGATAAGGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGCCATGGGATGGACATAATGGCACCATCAATGCCAGTCAGATCTTCTGACAGCAAGGATTTTGACATCGTCCGTAACACAAATGATATTGAAGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGTTATTAAGAAAACTAGAGAATGAAATTAAGGAAATAAAAGGAGCAATGGTAGAGGACAACGGATTTTGCATCTCTGTACACTTCCGGCAGGTCCAAGAAAAGGATTATGACGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAATAATCCACAATTTTGCTCAACAGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAAAGTGGAACAAAGGAAATGCCGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTGCACTGATATCCTTCCTGTGTATATTGGTGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGCAGAGAGCAAGGTTATCCAATCATAGTGTCTTCAGTTCCAAGAGAAACCAACGCTTTGTACTCTTTGCGTGACCCATCGGAAGTACTAATCTTTTTGTCATGGTTGGCCAAATGGAAGAAAGCCTCTTACTAA 1092 0.3718 MKYIFLFLVIFKIIKRRLTKLQETMGFQTSNSTKRIAQSIFKAKEDSIDAHENSLIQRTTKNFIDNTQTNTTEYDSWVVRYPSALNSFDTLMKAATEKRIIVFLDYDGTLSPIVNDPDRAFMSDEMRATVFEVATYFPTAIISGRSRDKVKDFVKLNNLYYAGSHGMDIMAPSMPVRSSDSKDFDIVRNTNDIEVPFQPAKKFLPAIRELLRKLENEIKEIKGAMVEDNGFCISVHFRQVQEKDYDVLEEKVKSVLENNPQFCSTEGKKVMEIRPSIKWNKGNAVEYFLDTLGLSSCTDILPVYIGDDRTDEDAFKVIQSREQGYPIIVSSVPRETNALYSLRDPSEVLIFLSWLAKWKKASY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00995 363 Coils Coil 238 258 - -
Cca03g00995 363 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 101 318 IPR006379 -
Cca03g00995 363 Gene3D - 185 363 IPR023214 -
Cca03g00995 363 Gene3D - 100 183 IPR023214 -
Cca03g00995 363 TIGRFAM T6PP: trehalose-phosphatase 98 357 IPR003337 GO:0003824|GO:0005992
Cca03g00995 363 Coils Coil 204 227 - -
Cca03g00995 363 CDD HAD_TPP 102 348 - -
Cca03g00995 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 362 IPR044651 GO:0004805|GO:0005992
Cca03g00995 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 362 - -
Cca03g00995 363 SUPERFAMILY HAD-like 101 359 IPR036412 -
Cca03g00995 363 Pfam Trehalose-phosphatase 103 346 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00995 Cca-Chr3 24467296 24471334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00995 96 356 Trehalose Biosynthesis Gene Families AT1G23870 28.058 2.64e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00995 K01087 - gmx:100809194 625.935