Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00994 ATGATGGAGTGCAACAAAGATGAGGCACTTAGGGCCAAGGAAATAGCTGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAGTTTGCTCTCAAGGCTCAAAATCTGTATCCTGATTTGGAGGATATTTCCCAGCTTTTGACAACAATTGATATTTATATATCTGCTGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAGGAGACTGTCAGAAAGCAATACAGGAAGCTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAGGCATGGAGTTTGTTATCAGATAAGACCAAGAGACTAGAATATAACCAAAAGAGGAGTTTGAAAGGATTCCAACATAATACTCCCAACCATGTTGGAGCTCAATCAGATGTACCCAGTTCAAACGGTTTTTATAATGTAAAGAAAAATGTAACTTCAAATGTGGGGACTGGTAATGGTCGGGCACGGGCACCTTCAACTCCAGTTCCTCCACATAAAAAGGCTGAAACCTTTTGGACTATCTGTAAACGGTGCAAGACACATTATGAATATCTCAGGGTTTATTTGAATCACACCCTTTTATGTCCAAACTGTAATGAAGCTTTTGTTGCTGTAGAGAGGGGTCCACCACCCAATGTTTTTAAGCCACCAAATTGGTCTTCTCATCAACGACATCAGACTTCCCAACACCATGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACTCCAGAATGGCTGGTTTTGGTAGCACTGATGGATCAACATCTGTTGCAGCTCAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTAAAGAGAGAGGGTTCTTTTCACAAAGCTGAAAAACCCATGAAAAAAAGGAGGACAGATGATGTTCGGATTAATGGCTATCAAGGATACATGGCAAATCATATGGCTACGGGACATGGAGCAGCTGGTTTTGGCAGCTTTTCTGAGACAGGAAAGGCTAACTTGGAAACTGAAAGGAATCATGGTTTTTCAGGTTTTCCTGGCAAGCATTACAGCACAAGAGAATTGTCCATGTTGGAATTACGAAACATGTTGATGGATAAGTCACGCCTTGAAATTCGTAAGAAACTTCAAGAATGGAAATCCATAGCTGAAGCAAAGATTAACAAGGACAAAGAGAATAAAAGACAGAAAAGCACATTTAATGGCAAAGCAACTGATTCAGAGAAGCTGAGGGAGCCCACAGTTAATGGTAACAGGCATCCGGACATTGATTCTTTCCCTGTCAGATCTGATGATACAGTTGAAAAGAACCAAACTTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAATTTTGACTTGGATAGAGATGAAAATTCCTTTGCAGAGGACCAGGTATGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTAAAGTTCACAAGGTGATCTCCATAAAGCCATTTAAAATGCGAATTAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATTGATTGGGTTGGTTCTGGTTTTTATAAAACTTGTGGGGATTTCAGAACTGGCAAGCATGAAATATCTGAATCGTTAAATTCATTCTCTCACAAGGTTAGGTGGACAAAAGGCACGAGAGGCGTGGTTCGTATCTTTCCAGGAAAGGGGGAAGTCTGGGCTCTTTATAGAAACTGGTCTCCTGATTGGAATGAACATACCCCTGATGATGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCAATGAAGAAGAAGGCATATTAGTTACCTCCCTTGTTAAGGTTGCTGGTTTTAGGACTGTGTTTCAAAGGCACATGGATCATAATCAGGAGAGGAGGATTCCTAAAGAGGAAATGTTTCGATTCTCTCATCAGGTTCCTAATTACTTGCTTACTGGCCAAGAAGCTGATAATGCTCCAGAGGGTTGTCGAGAGTTGGATCCAGCCGCTACTCCTTTAGACCTCCTTCAGATAATAACAGAAGCTAATAAGACATCGGATAATGCTTAG 2088 0.4133 MMECNKDEALRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDISQLLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTPNHVGAQSDVPSSNGFYNVKKNVTSNVGTGNGRARAPSTPVPPHKKAETFWTICKRCKTHYEYLRVYLNHTLLCPNCNEAFVAVERGPPPNVFKPPNWSSHQRHQTSQHHAGSNNTNFQWGSHSRMAGFGSTDGSTSVAAQAASVVQQASEKVKREGSFHKAEKPMKKRRTDDVRINGYQGYMANHMATGHGAAGFGSFSETGKANLETERNHGFSGFPGKHYSTRELSMLELRNMLMDKSRLEIRKKLQEWKSIAEAKINKDKENKRQKSTFNGKATDSEKLREPTVNGNRHPDIDSFPVRSDDTVEKNQTYVTINVPDPDFHNFDLDRDENSFAEDQVWAAYDDDDGMPRYYAKVHKVISIKPFKMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEISESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDDVIHKYDMVEVLEDFNEEEGILVTSLVKVAGFRTVFQRHMDHNQERRIPKEEMFRFSHQVPNYLLTGQEADNAPEGCRELDPAATPLDLLQIITEANKTSDNA 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00994 695 Gene3D DnaJ domain 64 174 IPR036869 -
Cca03g00994 695 MobiDBLite consensus disorder prediction 291 310 - -
Cca03g00994 695 MobiDBLite consensus disorder prediction 236 273 - -
Cca03g00994 695 SMART dnaj_3 66 123 IPR001623 -
Cca03g00994 695 PANTHER HEAT SHOCK PROTEIN-LIKE 2 690 - -
Cca03g00994 695 CDD DnaJ 67 120 IPR001623 -
Cca03g00994 695 PANTHER BNAC03G44070D PROTEIN 2 690 - -
Cca03g00994 695 Pfam Domain of unknown function (DUF3444) 455 661 IPR024593 -
Cca03g00994 695 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Cca03g00994 695 Pfam DnaJ domain 67 128 IPR001623 -
Cca03g00994 695 MobiDBLite consensus disorder prediction 293 310 - -
Cca03g00994 695 MobiDBLite consensus disorder prediction 403 443 - -
Cca03g00994 695 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cca03g00994 695 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cca03g00994 695 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cca03g00994 695 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cca03g00994 695 SUPERFAMILY Chaperone J-domain 58 127 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00994 Cca-Chr3 24438289 24443804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00994 5 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.760 5.32e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00994 - - gmx:100814722 1310.43