Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00984 ATGAAAATCCCCAATCCCATACTCACGCTCTTCAATTTCATCCTCCTCAACCCTCCCTTAACCCTAGAAACATGCGTGGACACCGTTTGCCACGTCCTCATCCGATTCCCCTTCCACACAGAAGAATCATGCGGATACCCAGGCTTCCAAGTATCATGCAGCCAGAACAACCAAACACTGCTCAACCTCCCCAATTGCGGCCAACTCAAAATCCAGAGAATAAACTACGCCGCGCAGCAACTATGGCTGAACGACCCCAACAACTGCCTCCCCAAACGCCTCCTCTCTCTCAACCTCTCCGCCTCCCCCTTCCACGCCGTTTACCACCACCGCTTCACCTTCTTCAACTGCTCCTCCAACTTGGACTACCTCCAGCGCCGATACATCGCCATACGTTGCCTCAGCCACGCTCCCACCTACGCCGTTTTCGCCACTCCTTCTCCCACCGTTGTTGTGCACTTGTCGTCGCTCTGCGTTTTGGTTGGAGCCGTCAACGTCCCCGTTCAGTTGCCGTTTTATGACCGGGTGCTCTCGTCTGAGCTCAGCGACGACCTGCGCCTGTCGTGGGACTCGCCGGCGTGCGGCAGGTGCGAGTCCCACGGTGGCCGGTGCGGCTTCAAGGGTAATGACACTGTTGAGCTTGACTGTTACCCTCTCCCTTCACAAGGGATTTCCCGTGGTGCACGTTATGCCATAGCCATATGCATAGGGGTACCGGCTTTGTTGTGCTCCATTGCAGTACTGCGTTGCATCTGCAGCTGGTTCAGAGTCAGGATCCGTAATGGGCCTTGGGCTTATGAAACGGTGGCAGATTTTGAGGCTCTAGCAGGCTCACCGCCCGCCACGGTAGCTGGCCTGGACAGGCCCACAATTGAATCCTACCCAAAAATAGTTATAGGTGAGAACAGACGCTTACCCAAGAAGGGTGACAAAACTTGCTCAATATGCCTCTCAGAGTACATGCCCAAAGAGACAGTGAAAACCATACCTGAATGTGGACACTGTTTTCATGCACAATGCATTGATGAATGGCTTCCACTGAACGCGTCCTGCCCTATTTGCCGAACTTCTCCCTCAAAGTTACCACAACCGCGTGCTAGATCATCACCATAA 1113 0.5391 MKIPNPILTLFNFILLNPPLTLETCVDTVCHVLIRFPFHTEESCGYPGFQVSCSQNNQTLLNLPNCGQLKIQRINYAAQQLWLNDPNNCLPKRLLSLNLSASPFHAVYHHRFTFFNCSSNLDYLQRRYIAIRCLSHAPTYAVFATPSPTVVVHLSSLCVLVGAVNVPVQLPFYDRVLSSELSDDLRLSWDSPACGRCESHGGRCGFKGNDTVELDCYPLPSQGISRGARYAIAICIGVPALLCSIAVLRCICSWFRVRIRNGPWAYETVADFEALAGSPPATVAGLDRPTIESYPKIVIGENRRLPKKGDKTCSICLSEYMPKETVKTIPECGHCFHAQCIDEWLPLNASCPICRTSPSKLPQPRARSSP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00984 370 Pfam Wall-associated receptor kinase galacturonan-binding 30 85 IPR025287 GO:0030247
Cca03g00984 370 SMART ring_2 313 354 IPR001841 -
Cca03g00984 370 SUPERFAMILY RING/U-box 306 360 - -
Cca03g00984 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 365 - -
Cca03g00984 370 Pfam Wall-associated receptor kinase C-terminal 172 217 IPR032872 -
Cca03g00984 370 ProSiteProfiles Zinc finger RING-type profile. 313 355 IPR001841 -
Cca03g00984 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 365 - -
Cca03g00984 370 Pfam Ring finger domain 312 355 IPR001841 -
Cca03g00984 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 360 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00984 Cca-Chr3 24298068 24300307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00984 32 363 C3H Transcription Factor Family AT2G46495 37.537 6.73e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00984 - - vun:114163980 577.015