Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00982 atgcatgaattataccatcaatatgtcaattctaagtttggtgagcccattgagtattctgcatatcttgatgttttctcagacacagataagattccccgcaaaatgaaAATGACCAGgcagtaccgagaatatatgatgaatcttttggagtatctattatacttcttccagcggacagagcccctgcaagatcttgatcgaattttctcaaagGTAACAActgagtttgaagaaaattgggctgctggtaagatacagggatgggaaaatgtcaatcaggagaatggacatatacctgctcagcatgctgcaattgatcttgattattatagtacaattgaagaggtgatggaagtgggtcctgaaaggttaaaggaGGCACTGGCTGCATTGGGGCTTAAGACTGGTGGTACTGTTCAGCAACGTGCAGAGAGGCTGTTTCTCACTAAGCACACGCCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGGGCACGTGGTGTAGATAAAAATGGGGTTGCTTCAGTTCCACAAGATGGAAATTCTAAAGAAATTGCATTGATGGAGGCCAAAATGACAAAACTCTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGATAATGTTGTAAAGAAGCAGGCCCTAACATACGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACACAAGAAGACACTGAAAGCGAAGACGAGGAGCAACAGATATATAATCCCCTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGTTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAAATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGCATGCGGTGTCTTGGTATCCCAAATACTAAGAACTTCAATGAAATCACATCAATTGAGGAAGCCAAGGATCTTTGGAAGAAGATACAGCAAAGACAAGGAGTAAACAAGTGGCGGCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACGCCGACTTACAGCGCCAAGGACTGATATGA 1110 0.291 MHELYHQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYMMNLLEYLLYFFQRTEPLQDLDRIFSKVTTEFEENWAAGKIQGWENVNQENGHIPAQHAAIDLDYYSTIEEVMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGARGVDKNGVASVPQDGNSKEIALMEAKMTKLCDLLEETIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYADLQRQGLI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00982 369 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 1 37 IPR031774 -
Cca03g00982 369 Coils Coil 213 240 - -
Cca03g00982 369 Pfam SF3a60/Prp9 C-terminal 250 369 IPR024598 GO:0000398|GO:0003723|GO:0005681
Cca03g00982 369 Pfam Replication stress response SDE2 C-terminal 85 165 - -
Cca03g00982 369 ProSiteProfiles Zinc finger matrin-type profile. 274 305 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cca03g00982 369 PANTHER SPLICING FACTOR SF3A-RELATED 1 369 - -
Cca03g00982 369 MobiDBLite consensus disorder prediction 223 242 - -
Cca03g00982 369 PANTHER BNAA03G01920D PROTEIN 1 369 - -
Cca03g00982 369 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00982 Cca-Chr3 24245531 24253582 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00982 1 369 C2H2 Transcription Factor Family AT5G06160 74.865 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00982 K12827 - gmx:100815393 685.256