Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00978 ATGATTATCAAGCGGAACTTGAAATCCCAAATGCCGAGTCTGAAACGGGTCAGAGTCGGTGACTCGGTGGGAGAGGACGACGAGTGTTCCTACGCTCGCAAGAAGAGAAAGACCAATGGTTACTACCCTCTGAACCTTCTCCGCGACGTGGCCGCCGGCGTAATCCCGGTGAGCTTTCACGGCCTGCTCGGCGCCGCCGGCGTGGCGGAGAAGGGATTCTCTGCGGCGTGGTGCACGCAGGTGTCGTGCAACGAAGTGGAACCGGACGCGAAAAACGACGTCGTCGCGGTGGAAGTGAAGAAGAAGAGCGAGGTTCAGCGGCCGCCGCTGGTTCGGACTTCGAGGGGGCGGGTTCAGGTTCTGCCTTCGCGGTTCAACGACTCGGTTATTGATAATTGGAGGAAGGAGAGCAAGAGTAGTAGCGGCTTGCGGGATTGTGATAATGACGAAGAATTTGAATGCAAGAAGGAGAAGTTCAGTTTCAGGGCACCCAAAGTTTGCAATCAGAAGAAGGAGAAGACGAGTTCTAAGGCTCGCAAGTACTCCGCATTGTGCAAGAGTTTTGATGATAAGAGCAAGTGTTTGAGTTTGCAGGGTGGCGCATTGGCCTTGAGGCGTGGGGTGGTGGTTGAAGAAGATGAGAGGGGAAGGTTTTTGGAGGTGGAAGGGGTTTTGAAGAGAGATGGATTGTTTGGACCCGAAGATTTTTATGCGGGTGATATAGTGTGGGCCAAAGCTGGGAGAAAGGAACCTTTTTGGCCAGCCATTGTTATTGATCCTATGTCTCAGGCACCTGAGTTGGTTCTCAGGTCTTGCATAGCTGATGCAGCTTGTGTCATGTTTCTTGGGTACGCGGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGATTATGTGGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTACTATAATCCTTCTGACTTCCAAATGGCAGTAGAGGAGGCATTTTTGGCGGAGAGGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTGGGAATAATGGTTATGATGATTCTATTCTGAAAGCCTTTCAGGAGGTCAGTGGTTCAAACCAGTATGCAGGATATCACTTTCTGAACCAGGATTTATTTGATAAGAAAGAGACAGGGCCCTGTGAAGCCTGTGGATTGAGACTTCCTTACAGGATGCTAAAGAAAACAAAGGATTCAAGTTCTGGTGCCCAATTCCTGTGTAGAACATGTGCTAGGGTGCGCTGTGATGGATGCAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGGGCTTCCGAATAAGGTCACTGTTCTCTGCAATGGTGTGGAGGGCATATATTTTCCAAGCCTTCATTCAGTTGTGTGCAAGTGTGGGTTTTGTGGGTCAGAAAAGCAAGCACTGAGTGAATGGGAACGACACACGGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCTCTGGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTACTGCTCAAGTTTCTGCCAAGCCCAAGAAACCTTCTCTAAAAGAAAGAAAGCAGAAATTGCTTACCTTCTTGCAAGagaagtatgaacctgtttatgctaagtggactacagaacgctgtgctgtttgtagatgggttgaagactgggactacaacaaaattatcatttgcaacagATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGTGACTTTACATCTTGGGTTTGTAAGACCTGCGAAACACCTGAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACTGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCCTTGGGTATTCTAAGTATTCCATCAAACTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGATCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAACGGCAGGCAAACAACAAAAATGGTCTCGTATTGTGCTTACCACAGGGCTCCCAATCCAGATACCGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCGAGGTTAATCTCATCTAACAGAAGAAAGCAAGATGACCCTCCTGTTGTTAACACTGAGCATGAACCATTTTCTGCGGCTAGGTGTCGAATCTTTCAAAGAACAAACCATAACAAAAAGAGAGCAGCAGATGAAGCCGTTTCTCATCAAGCGAGGGGTCACTATCATCATCCTTTAGATGCAATACAGAGTTTAAATACACCCAGAGTGGTACCTGAACCTCAGGCATTTTCTTCCTTCAGAGAACGCCTTTACCACTTGCAGAGAACTGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGCATTGCAGATCTGAGGGAGGCGCGCTATAGATTAGAAGGGAAAGACTGCTATCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGAGGAGAGCCGGATTGTACTCATCGCTAAGACTAACGTGTCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCATGCCTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAG 3102 0.4423 MIIKRNLKSQMPSLKRVRVGDSVGEDDECSYARKKRKTNGYYPLNLLRDVAAGVIPVSFHGLLGAAGVAEKGFSAAWCTQVSCNEVEPDAKNDVVAVEVKKKSEVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSGLRDCDNDEEFECKKEKFSFRAPKVCNQKKEKTSSKARKYSALCKSFDDKSKCLSLQGGALALRRGVVVEEDERGRFLEVEGVLKRDGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDYVDRFQGQSELSYYNPSDFQMAVEEAFLAERGFTEKLIADINTAAGNNGYDDSILKAFQEVSGSNQYAGYHFLNQDLFDKKETGPCEACGLRLPYRMLKKTKDSSSGAQFLCRTCARVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLGLPNKVTVLCNGVEGIYFPSLHSVVCKCGFCGSEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHATAQVSAKPKKPSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKTCETPEIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRRKQDDPPVVNTEHEPFSAARCRIFQRTNHNKKRAADEAVSHQARGHYHHPLDAIQSLNTPRVVPEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDEESRIVLIAKTNVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00978 1033 CDD SET_SETD1-like 878 1029 - -
Cca03g00978 1033 Pfam SET domain 902 1007 IPR001214 GO:0005515
Cca03g00978 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 463 IPR013083 -
Cca03g00978 1033 Pfam PWWP domain 239 333 IPR000313 -
Cca03g00978 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 650 IPR013083 -
Cca03g00978 1033 ProSiteProfiles PWWP domain profile. 238 307 IPR000313 -
Cca03g00978 1033 Gene3D - 233 339 - -
Cca03g00978 1033 ProSitePatterns Zinc finger PHD-type signature. 602 647 IPR019786 -
Cca03g00978 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 770 IPR013083 -
Cca03g00978 1033 SMART PostSET_3 1017 1033 IPR003616 -
Cca03g00978 1033 Gene3D SET domain 788 1033 IPR046341 -
Cca03g00978 1033 MobiDBLite consensus disorder prediction 796 818 - -
Cca03g00978 1033 SMART PHD_3 712 768 IPR001965 -
Cca03g00978 1033 SMART PHD_3 417 459 IPR001965 -
Cca03g00978 1033 SMART PHD_3 601 648 IPR001965 -
Cca03g00978 1033 PANTHER PHD FINGER PROTEINS 1 1033 - -
Cca03g00978 1033 CDD PHD_ATX3_4_5_like 601 647 IPR042011 -
Cca03g00978 1033 SUPERFAMILY FYVE/PHD zinc finger 600 664 IPR011011 -
Cca03g00978 1033 ProSiteProfiles SET domain profile. 891 1008 IPR001214 GO:0005515
Cca03g00978 1033 SUPERFAMILY FYVE/PHD zinc finger 412 462 IPR011011 -
Cca03g00978 1033 SMART set_7 891 1014 IPR001214 GO:0005515
Cca03g00978 1033 SUPERFAMILY Tudor/PWWP/MBT 231 337 - -
Cca03g00978 1033 Pfam PHD-zinc-finger like domain 655 767 - -
Cca03g00978 1033 ProSiteProfiles Post-SET domain profile. 1017 1033 IPR003616 -
Cca03g00978 1033 ProSiteProfiles Zinc finger PHD-type profile. 599 650 IPR019787 -
Cca03g00978 1033 CDD PHD_TCF19_like 418 458 - -
Cca03g00978 1033 Pfam PHD-finger 614 648 - -
Cca03g00978 1033 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1033 IPR025780 -
Cca03g00978 1033 SUPERFAMILY SET domain 884 1030 IPR046341 -
Cca03g00978 1033 CDD ePHD_ATX3_4_5_like 656 767 IPR041955 -
Cca03g00978 1033 ProSiteProfiles Extended PHD (ePHD) domain profile. 653 768 IPR034732 -
Cca03g00978 1033 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00978 Cca-Chr3 24180857 24191176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00978 602 767 C2H2 Transcription Factor Family AT3G14740 32.948 9.63e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g00978 zf-HC5HC2H_2 2.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00978 - - gmx:100811337 1906.72