Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00974 ATGGAATACGGAAGATTGGGACCGTCTGATCCTGGTGGCTCCTCGCGGATCAACGCTCCAAGATCTTCCGGGAATAAGAAGAGGATTATCTTTGTCTCACTCCTCGCGGTCTGTTTAATAGCGGCCTCAGCCGTTGTGGCTGTCGTAGTACGTGTCCGGGCGGACTCCAACGGGCCTGGGCCTGGGCTCCGGGGGAGGCCCACGCAGGCCATTTCCCGCACGTGCAGCAAAACGCGGTTCCAGACGCTCTGCGTGAACTCGCTGGCGGAATTCCCTGGATCGGCCACGGCGTCGGAGAAGGACCTCGTCcacatttccttcaacgtcacgctgcagcacttctccaaggcgctctactcCTCCGCCGCCCTCTCCTACGCCGCCATGCCCCCGCGCGTCCGCGCCGCCTACGACGACTGCCTCGAGCTCCTCGACGACGCCGTCGACGCGCTCGCCCGCTCCCTCGACACCGTCTCCGTGGGCGCGGTCGGCCGCGCCGACGACGACGTGCTCACGTGGCTGAGCGCCGCCCTCACCAACCAGGACACGTGCGCGGAGGGGTTCGCCGACGCCGCCGACGGCCCCGTGAAGGAGCAGATGGCCGGCAACCTGAGGGACTTGTCGGAGCTCGTGAGCAATTGTCTGGCGATATTCTCCTCTGCCGGCCCCGGCGACGACTTCGCCGGCGTCCCCATTCAGAATAGGAGGCGACTCATGGCAATGCGAGACGATAATTTCCCGAGATGGTTGAATCCAAGAGATAGGAGATTGCTGAGTTTGCCCCTGAACGCGATTCAAGCGGATATTGTGGTCTCCAAAGACGGTAACGGCACCGTTAAAACCATCGCCGATGCCATTAAGAAGGTGCCCGATTATGGTTCACGCCGCTTCATTATCTACGTCAGAGCTGGAAGGTATGAAGAGGAGAATTTGAAGTTGGGGAGGAAGAAAACAAATGTGATGTTCATAGGGGACGGGAAGGGCAAGACCGTCATCACGGGTGGAAAAAATTATTACGAGAACCTGACCACATTTCACACCGCATCCTTTGCTGCTAGTGGTGCTGGTTTCATCGCAAAAGACATGACGTTCGAGAACTACGCGGGGCCGGGGAAGCACCAAGCGGTGGCCCTCCGCGTCGGAGCGGACCACGCGGTGGTGTACCGGTGCAACATCATCGGATACCAAGACACATTGTATGTACACTCCAATCGTCAATTTTTCCGCGAATGCGACGTTTACGGAACCGTGGACTTCATATTCGGCAACGCTGCGGTGGTTTTCCAAAACAGCAGCCTCTACGCTCGCAAGCCCATGGCCCAACAGAAGAACACCATCACGGCCCAAAACCGAAAAGACCCGAATCAGAACACGGGCATTTCGATCCACAACTGTCGGGTACTGGCCACAGCGGATCTGGAAGCTTCGAAGGGTAGCTACCCCACGTATCTGGGTCGGCCCTGGAAACTTTACGCTAGAACCGTGTACATGTTATCCTACATGGGGGATCACATACATCCACGTGGATGGCTCGAGTGGAACACTTCGTCGTTTGCTTTAGACACGTTGTACTACGGTGAGTACATGAATTCTGGGCCCGGTGCGGCGGTGGGCCAACGCGTGAATTGGGCCGGGTATCGGGTGATCACGTCGACGGTGGAAGCATCTAGATTCACGGTGGGCCAATTCATATCGGGCTCATCCTGGTTGCCGTCCACCGGAGTGGCATTCATTGCTGGGTTATCGACCTAA 1752 0.5645 MEYGRLGPSDPGGSSRINAPRSSGNKKRIIFVSLLAVCLIAASAVVAVVVRVRADSNGPGPGLRGRPTQAISRTCSKTRFQTLCVNSLAEFPGSATASEKDLVHISFNVTLQHFSKALYSSAALSYAAMPPRVRAAYDDCLELLDDAVDALARSLDTVSVGAVGRADDDVLTWLSAALTNQDTCAEGFADAADGPVKEQMAGNLRDLSELVSNCLAIFSSAGPGDDFAGVPIQNRRRLMAMRDDNFPRWLNPRDRRLLSLPLNAIQADIVVSKDGNGTVKTIADAIKKVPDYGSRRFIIYVRAGRYEEENLKLGRKKTNVMFIGDGKGKTVITGGKNYYENLTTFHTASFAASGAGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDVYGTVDFIFGNAAVVFQNSSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRVLATADLEASKGSYPTYLGRPWKLYARTVYMLSYMGDHIHPRGWLEWNTSSFALDTLYYGEYMNSGPGAAVGQRVNWAGYRVITSTVEASRFTVGQFISGSSWLPSTGVAFIAGLST 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00974 583 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Cca03g00974 583 PANTHER PECTINESTERASE 20 581 - -
Cca03g00974 583 SUPERFAMILY Pectin lyase-like 264 580 IPR011050 -
Cca03g00974 583 SMART PMEI_2 66 217 IPR006501 GO:0004857
Cca03g00974 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 221 IPR035513 -
Cca03g00974 583 Gene3D - 262 581 IPR012334 -
Cca03g00974 583 CDD PMEI-like_3 75 219 - -
Cca03g00974 583 Pfam Plant invertase/pectin methylesterase inhibitor 70 217 IPR006501 GO:0004857
Cca03g00974 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 219 IPR035513 -
Cca03g00974 583 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g00974 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 65 219 IPR006501 GO:0004857
Cca03g00974 583 PANTHER PECTINESTERASE 20 581 - -
Cca03g00974 583 Pfam Pectinesterase 268 566 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00974 Cca-Chr3 24013560 24018226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00974 1 582 Carbohydrate Esterase AT5G53370 66.102 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00974 - - gmx:100808236 949.888