Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00968 ATGCTCGCGTTTCGATCCAAGTCCTGCACTTACAGGGAAACAGCCACCCTCGCGCTTTGCCACTTCAGGCGATTGGTCTTCACCTTCTCACGCGCCGGCACCCCTCGCTTGCCTTCTCCGCACGCCGCCTTCGGGGAACGGGGACGCTGGAACGTCGCCGCCTCGTTGGGGGACCCACCGGAAGTATGGTCCGGCGGCGGGATTGTCGTTCGCCCCGGGAGTTCCAATTTCGAACTCACCGGCGCCGCCGCCCCCAATTCCGGCGATTCCAAGGAGGGGTGTTGGGGCGGCTCCAATTTGGGGACCAATTTCCCGACGCCCAAGGAGATTTGCAAGGGGCTCGATAAATTCGTGATTGGACAAGAGAGGGCCAAAAAGGTGCTTTCTGTGGCGGTTTATAATCACTATAAGAGAATATTTAACGAGTTCCCTTCGCCTAAGTGGCCTGCAGGAGATTCAGATGGTAATGTGAAGGCTGAAGCTGTTGATGATGATAAAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGGCCAACAGGATCAGGTAAACCAACATTACTTGCCAAAACCTTGGCTCGGTTTGTAAATGTGCCCTTTGTTATTGCAGATGCAACTTCACTTACTCAGGCAAGTTATGTTGGAGAGGATGTGGAATCCATATTATACAAGCTCCTCGTGGTTGCAGATTATAATGTGGCAGCTGCACAGCAAGGCATTGTTTACATTGATGAAGTTGACAAGATTACCAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTTTCTGGTGAAGGTGTGCAGCAGGCATTACTAAAGATGCTTGAGGGAACGGTTGTCAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCCAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTCATTTGTGGAGGAGCATTTATTGACTTAGAGAAAACGATCTCAGAAAGGCGGCATGATTCTTCTATTGGATTCGGAGCACCTATACGTGCAAACATGAGGACTGGTAAAGTCACAGAAGCTGCTGTTGCATCATCGTTATTAGAAACTGTTGAAAGTAGTGATCTTATTGCATATGGTTTAATACCTGAATTTGTTGGGCGCTTTCCTATACTTGTCAGTTTATCAGCTTTAACGGAAAACCAACTCATTCAGgtactcacagaaccaaagaatgctctggggaagcaatacaagaagatgttccaaatgaatgggGTAAAGCTACATTTTACGGAAAATGCTCTAAGATCAATTGCCAGAAAAGCAATATCTAAAAACACTGGTGCTCGGGGATTACGGTCAATATTAGAGAGCGTGTTGGTAGATGCCATGTATGAGATTCCAGATATTAGAACAGGCGATGATGTTATAGACGGCGTTGTCGTTGATGAAGAGGCCGTAGGAAGTGAGGGGCGTGGGAAAGGGGCTAAAATCCTTTATGGTAAGGGTGCATTGGATCGTTATCTTTCGGAGCAGAAAAATGATTCAGAGACCATGGAGGCATCAGCAGCAGATAATGAAGCAGATACAGAACTTCCTTCCATTGTTGCCAGCATCACGACACAACCTAAGCCTCGAACACAGGGAATTGAAGAGAGAAGAGGATTGAGAAAGGGGAATACCCAGATGGACTTGGACAGCGTTGAGTGTGTGTCATCCTCTGATGGCATGGATGAGGATGAGATCCACCCCAATCTTCACCATTCTGAGTTTTCTTCCACCAAGCCTCGCAATGGAGGCACTAATAACAACAATTCTGTGGGCCCCAATGCCATGGCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAACGGCCATACACTTTGTTCCACGTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATCAGGTGTCTGGCACTGGAGAAGGTGGCTGAATCACTTGAGTTGCCTTGCAAGTACTACTCTCTTGGATGTCCAGAAATCTTCCCATACTACAGCAAGCTTAAGCATGAGACAGTTTGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCGGACTGTTCTGTTGTTGGGGATATTCCTTACCTTGTTGCTCATTTGAGGGACGATCATAAAGTAGACATGCACACAGGATGCACATTCAACCACCGTTATGTGAAATCAAATCCGCGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGCCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTATACATGGCATTTCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGTCTAGAGGTTGGAGCCAATGGCAGGAAACTCATTTGGGAGGGTACACCGCGAAGTGTTCGGGATAGCCACCGTAAGGTTAGGGATAGCCATGATGGGCTCATTATTCAAAGAAATATGGCCCTATTTTTCTCTGGTGGGGATAAAAAGGAGCTTAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCGGATGCTGGAGTGTGCATGCCAAATCTCTGTAGTTAA 2616 0.4534 MLAFRSKSCTYRETATLALCHFRRLVFTFSRAGTPRLPSPHAAFGERGRWNVAASLGDPPEVWSGGGIVVRPGSSNFELTGAAAPNSGDSKEGCWGGSNLGTNFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNEFPSPKWPAGDSDGNVKAEAVDDDKVELEKSNILLMGPTGSGKPTLLAKTLARFVNVPFVIADATSLTQASYVGEDVESILYKLLVVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPIRANMRTGKVTEAAVASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHFTENALRSIARKAISKNTGARGLRSILESVLVDAMYEIPDIRTGDDVIDGVVVDEEAVGSEGRGKGAKILYGKGALDRYLSEQKNDSETMEASAADNEADTELPSIVASITTQPKPRTQGIEERRGLRKGNTQMDLDSVECVSSSDGMDEDEIHPNLHHSEFSSTKPRNGGTNNNNSVGPNAMAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSDCSVVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCMPNLCS 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00968 871 CDD RING-HC_SIAHs 607 645 - -
Cca03g00968 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 661 IPR013083 -
Cca03g00968 871 CDD AAA 171 330 - -
Cca03g00968 871 SUPERFAMILY RING/U-box 599 648 - -
Cca03g00968 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 717 IPR013083 -
Cca03g00968 871 Gene3D - 381 482 - -
Cca03g00968 871 Pfam C-terminal, D2-small domain, of ClpB protein 382 451 IPR019489 -
Cca03g00968 871 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 721 850 IPR008974 GO:0005515
Cca03g00968 871 ProSiteProfiles Zinc finger SIAH-type profile. 662 722 IPR013010 GO:0008270
Cca03g00968 871 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 523 - -
Cca03g00968 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 463 IPR027417 -
Cca03g00968 871 SUPERFAMILY TRAF domain-like 662 854 - -
Cca03g00968 871 MobiDBLite consensus disorder prediction 561 575 - -
Cca03g00968 871 MobiDBLite consensus disorder prediction 556 589 - -
Cca03g00968 871 Gene3D - 99 380 IPR027417 -
Cca03g00968 871 ProSiteProfiles Zinc finger RING-type profile. 609 645 IPR001841 -
Cca03g00968 871 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 523 - -
Cca03g00968 871 Pfam Seven in absentia protein family 651 850 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cca03g00968 871 Pfam AAA domain (Cdc48 subfamily) 170 375 IPR003959 GO:0005524|GO:0016887
Cca03g00968 871 SMART ClpB_D2_small_2 382 472 IPR019489 -
Cca03g00968 871 SMART AAA_5 170 334 IPR003593 -
Cca03g00968 871 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 102 471 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cca03g00968 871 CDD Sina 723 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00968 Cca-Chr3 23907888 23918936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00968 577 857 C3H Transcription Factor Family AT2G41980 76.512 5.70e-160 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00968 K03544 - gmx:100779768 894.419