Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00966 ATGGGGAAGAAAGGAACCGGCTGGTTCTCCTCCGTCAAGAAAGTTTTCAAGTCCTCTTCTAAAGACTCTCCCGACAAAAAGAAAGACAACAAGGAAAAGGATGAGCAATGGCAGCGTGAAGCGCCAGAGGAGGTGTCTGTGGAGCATTTTCCTGCAGAGAGTTCTCCAGATGTTACCAATGAAGAGAGTGCCACATCAACGCCAGTGACTGAAGATAGAAATCATGTCGTTGCCTTtgcagcggcaactgcagccgctgctgaagctgcGGTGGGGGCTGGTCAAGCAGCCGCCAGAGTTGTGAGATTGGCAGGTTATGGACGCCATTCCAAGGAAGAGAGAGCTGCAATACTCATTCAATCATACTACAGAGGCTACCTTGCTCGACGTGCACTGCGGGCTCTGAAGGGGTTAGTGAGGCTGCAAGCGCTTGTGAGGGGACACAATGTGCGAAAGCAAGCACAGATGACAATGCGATGCATGCATGCATTAGTCCGAGTGCAGACTAGAGTGAGAGCTCGTAGAATCCAGCTGACTCAGGAGAAGCTTCAGAGCAGAGTTGAGGAGCAGGTCCAAAAAGAGCTAGAGGAACATGAATCCAAGCTTTTGAGCCCCATCAAAATGTTAGATATGGATGGTTGGGACAATAGGCGCCAAAGTAGACAGCAAATTAAGGAAAATGATTTGAGGAAACATGAAGCAGCAATGAAGAGAGAAAGAGCTCTTGCTTACGCTTTCAACTGCCAGCAACAGATGAAGCAATACATGCAGGTAGACCCAAATGGTGAGGAAATTGGAAGCTATACCAATGAGCGTGAAAGAGCCCAATTGGATTGGAACTGGTTGGAACGTTGGATGTCATCACAATCACACAACTTAAGGCACTTTGGGTCACGTGAGACCCTTTACAGGACTCTTGCTTCTACTACAGCCACTTCTGTCACTGATGACATGTCTGAAGAAAAGACAGTTGAAATGGACATGGCTGCAGCTCTGGACTCAACTCATGCTAACATGGGCCTCGTCCACCAAGAGTCTTTTGACACAAGCCCAATCTCCAATAGGTACCACCAGCGCAACCACAGTGCAGGTGTACCTAGCTACATGGCCCCTACCCAGTCTACAAAGGCCAAGACTCGGAATCAAGGCCCGTTTAAGCAACGGGGCTCACCTGGGCCTCACTGGAACTCATCCACCAGGAGAAGTTTTGCCATTGGGTTGGGCTGTGACTCATCTAGCACTGGTGGGGCCTCTGCAGCTCCTGTGTTCCCAAGGAGCCCAAACCCAAAAATTAACGAGATTCGCCTCCAATCTAGACGGATATCTGGCGGCAGCCCAGATAATATTGGCATTGAGGATTGGGCCCTTCCCCTTGGAGCCAATGGTTGGGCTTGA 1395 0.4839 MGKKGTGWFSSVKKVFKSSSKDSPDKKKDNKEKDEQWQREAPEEVSVEHFPAESSPDVTNEESATSTPVTEDRNHVVAFAAATAAAAEAAVGAGQAAARVVRLAGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMHALVRVQTRVRARRIQLTQEKLQSRVEEQVQKELEEHESKLLSPIKMLDMDGWDNRRQSRQQIKENDLRKHEAAMKRERALAYAFNCQQQMKQYMQVDPNGEEIGSYTNERERAQLDWNWLERWMSSQSHNLRHFGSRETLYRTLASTTATSVTDDMSEEKTVEMDMAAALDSTHANMGLVHQESFDTSPISNRYHQRNHSAGVPSYMAPTQSTKAKTRNQGPFKQRGSPGPHWNSSTRRSFAIGLGCDSSSTGGASAAPVFPRSPNPKINEIRLQSRRISGGSPDNIGIEDWALPLGANGWA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00966 464 Pfam IQ calmodulin-binding motif 139 154 IPR000048 GO:0005515
Cca03g00966 464 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515
Cca03g00966 464 Pfam Protein of unknown function (DUF4005) 350 414 IPR025064 -
Cca03g00966 464 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Cca03g00966 464 MobiDBLite consensus disorder prediction 56 71 - -
Cca03g00966 464 MobiDBLite consensus disorder prediction 378 399 - -
Cca03g00966 464 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Cca03g00966 464 PANTHER IQ-DOMAIN 5-RELATED 1 436 - -
Cca03g00966 464 MobiDBLite consensus disorder prediction 18 47 - -
Cca03g00966 464 MobiDBLite consensus disorder prediction 1 71 - -
Cca03g00966 464 PANTHER IQ-DOMAIN 21 1 436 - -
Cca03g00966 464 SMART iq_5 111 133 IPR000048 GO:0005515
Cca03g00966 464 SMART iq_5 134 155 IPR000048 GO:0005515
Cca03g00966 464 Gene3D - 109 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00966 Cca-Chr3 23884497 23888596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00966 1 454 IQD Protein Family AT3G49260 47.500 1.01e-98 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00966 - - gmx:100808965 665.996