Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00960 ATGGACTTCATCTCCGAACACGATTTCCCCAACATTGACATCATTCCTCATTCCTTCGATTCATGGTTCACTTCTCAACCAAACAACCTGCACAAAATGATGGAGGTTTCACCCTTGGAGGGTTTCTACGAGCACGATTGGACTCACCACTTTCCTTACTCAAGCAAGCAACTTTGCTTCAATGAGTTACCGGACATTGAAAATTTCAACTTCGATTTAAGCCTCCCTCTCCTTGGTGAAGAAATGGAGGAGGTGGAACAAAAACCCTTGAAAGTAGTGGTGCCCCAAAAGGGGCATGGTGATCGTGATAAGGGTTTTGGGGGTGCTTTGGTGGTGAATGAGAAAGGGTTTGCCACACGTGTGAAGAAAGAGGAGGAGGAGAATGTTGATAAGAAGCCATTGCCAGTGCCTagaagcaatatgaagaagaagaagaagaataataataataagaagaGTTGTGTGTTGGAGTTTGAGCAGATAAAGAAGTATTTTGATGTTCCTATAAATGAAGCTGCGAAGAAAATGGATGTGGGGTTAACCCTTTTGAAGAGGAGGTGCAGGGAACTCAACATCATGCGGTGGCCTCATAGGAAACTCAAGAGCTTGCAGACAGTCATCGACAATGTTAAGGAATTGGGTTTGGCTAACGAGATTGCCATGTTGGAGAAGCATAAAAGGATGTTGGAAAAGTTACCAGGATTGGAACTGAGTGAAGAAACCAAGAAGCTGAGGCAGGCTTGTTTTAAAGCCAATTACAAGAGGAGAAGATGTCTGGCACTTAAAGCTTGA 792 0.4192 MDFISEHDFPNIDIIPHSFDSWFTSQPNNLHKMMEVSPLEGFYEHDWTHHFPYSSKQLCFNELPDIENFNFDLSLPLLGEEMEEVEQKPLKVVVPQKGHGDRDKGFGGALVVNEKGFATRVKKEEEENVDKKPLPVPRSNMKKKKKNNNNKKSCVLEFEQIKKYFDVPINEAAKKMDVGLTLLKRRCRELNIMRWPHRKLKSLQTVIDNVKELGLANEIAMLEKHKRMLEKLPGLELSEETKKLRQACFKANYKRRRCLALKA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00960 263 MobiDBLite consensus disorder prediction 123 137 - -
Cca03g00960 263 PANTHER PROTEIN RKD1-RELATED 111 259 - -
Cca03g00960 263 MobiDBLite consensus disorder prediction 123 149 - -
Cca03g00960 263 ProSiteProfiles RWP-RK domain profile. 137 224 IPR003035 -
Cca03g00960 263 PANTHER PROTEIN RKD4 111 259 IPR044607 GO:0003700
Cca03g00960 263 Pfam RWP-RK domain 156 203 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00960 Cca-Chr3 23725109 23726654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00960 156 260 AtRKD Transcription Factor Family AT5G53040 60.000 1.65e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca03g00960 RWP-RK 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00960 - - pvu:PHAVU_009G051600g 335.109