Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00960 | ATGGACTTCATCTCCGAACACGATTTCCCCAACATTGACATCATTCCTCATTCCTTCGATTCATGGTTCACTTCTCAACCAAACAACCTGCACAAAATGATGGAGGTTTCACCCTTGGAGGGTTTCTACGAGCACGATTGGACTCACCACTTTCCTTACTCAAGCAAGCAACTTTGCTTCAATGAGTTACCGGACATTGAAAATTTCAACTTCGATTTAAGCCTCCCTCTCCTTGGTGAAGAAATGGAGGAGGTGGAACAAAAACCCTTGAAAGTAGTGGTGCCCCAAAAGGGGCATGGTGATCGTGATAAGGGTTTTGGGGGTGCTTTGGTGGTGAATGAGAAAGGGTTTGCCACACGTGTGAAGAAAGAGGAGGAGGAGAATGTTGATAAGAAGCCATTGCCAGTGCCTagaagcaatatgaagaagaagaagaagaataataataataagaagaGTTGTGTGTTGGAGTTTGAGCAGATAAAGAAGTATTTTGATGTTCCTATAAATGAAGCTGCGAAGAAAATGGATGTGGGGTTAACCCTTTTGAAGAGGAGGTGCAGGGAACTCAACATCATGCGGTGGCCTCATAGGAAACTCAAGAGCTTGCAGACAGTCATCGACAATGTTAAGGAATTGGGTTTGGCTAACGAGATTGCCATGTTGGAGAAGCATAAAAGGATGTTGGAAAAGTTACCAGGATTGGAACTGAGTGAAGAAACCAAGAAGCTGAGGCAGGCTTGTTTTAAAGCCAATTACAAGAGGAGAAGATGTCTGGCACTTAAAGCTTGA | 792 | 0.4192 | MDFISEHDFPNIDIIPHSFDSWFTSQPNNLHKMMEVSPLEGFYEHDWTHHFPYSSKQLCFNELPDIENFNFDLSLPLLGEEMEEVEQKPLKVVVPQKGHGDRDKGFGGALVVNEKGFATRVKKEEEENVDKKPLPVPRSNMKKKKKNNNNKKSCVLEFEQIKKYFDVPINEAAKKMDVGLTLLKRRCRELNIMRWPHRKLKSLQTVIDNVKELGLANEIAMLEKHKRMLEKLPGLELSEETKKLRQACFKANYKRRRCLALKA | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00960 | 263 | MobiDBLite | consensus disorder prediction | 123 | 137 | - | - | |
Cca03g00960 | 263 | PANTHER | PROTEIN RKD1-RELATED | 111 | 259 | - | - | |
Cca03g00960 | 263 | MobiDBLite | consensus disorder prediction | 123 | 149 | - | - | |
Cca03g00960 | 263 | ProSiteProfiles | RWP-RK domain profile. | 137 | 224 | IPR003035 | - | |
Cca03g00960 | 263 | PANTHER | PROTEIN RKD4 | 111 | 259 | IPR044607 | GO:0003700 | |
Cca03g00960 | 263 | Pfam | RWP-RK domain | 156 | 203 | IPR003035 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00960 | Cca-Chr3 | 23725109 | 23726654 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g00960 | 156 | 260 | AtRKD Transcription Factor Family | AT5G53040 | 60.000 | 1.65e-39 | 136 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | RWP-RK | Cca03g00960 | RWP-RK | 4.9e-22 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00960 | - | - | pvu:PHAVU_009G051600g | 335.109 |