Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00946 ATGGGTAGCTTCAGCGAGGACGAGGAATGTCGGTTTTTCGATGCACAAGAGGATGTTGTTGTGTCCATTGCGGACGAAGGGGTGTCCAAGGGTTTTGATTATGAATTGTGGGTTCGGAGTCCAATGAGTGTGAGAGAGCGCAGGAACACGTTTAGGAAGAGGATGGGACTGGGTGTGGACTTGGTTGCCCTTGCAAATGAAAATTGTAGTGTTGAGTGTGAAGAGGTGATGGATAGAGTCAAAGTTGTAGAGGAGGAATTCTGTTCAACCCGGTCATCAATGTATAGTTGTCACAGTGAGAGATTTTCAGAGGGGTTTGGTTTAGTGGATAACTCGCCTTGTCAAGATGGGAATTTGGAGGGTAATGTGGATCAGGAGGGGCTGCAGTGTAGGGAGATGAGTGATGGAAGAGATCTAGACTCAGATCGCTTGGTGGATGAGCAGAAATCTAAGGATTTGGAGAATGTATTTAGGCAAACGGATGCTAATGCTCCTTCCCGGAGGACGAGTAGGGATTTAAAGGGCTGGTTGAGGAGATTGCGGTCGATAACATGCATGGTTGATAGGGAAGAGGGAGGTGATAATGAGGGAGAAGGTCTTGGTGAAATGTCAGGGTGTAGGCTTCGGAAAGTTAAGGTTCGCCAGTCCAAGAAGCACATGAAGGAACTTTCAGCTCTTTACATGAGGCAAGATATCCAAGCGCATGAAGGTTCAATTTTGACCATGAAATTTAGTCCTGACGGGCAGTATCTTGCTAGTGGTGGTGAGGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGAGGATAGATGTAATGAAGTTGACATTCCAGAAATTGATCCATCTTGCATTTACTTTACTGTGAATAACCTCTCTGAATTGACACCGCTGTTTATGGATAAAGAAAAATTAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCGGCTTGCATTGTTTTTCCTCCCAAGATCTTCCGGTTGGTGGAGAAACCATTGCAAGAATTTCGTGGGCATAGGGGAGAGGTTTTGGATCTCTCTTGGTCAAATAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTGTGGCACGTGAATCATGACCATTGCTTGAAAGTCTTCTCACACAGTAATTATGTGACATGCATACAATTCAATCCCGTGGATGATGATTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGTCAATTCCCGATTGTCATGTTGTTGATTGGATAGATATCAAAGATATAGTGACTGCAGTATGCTATCGGCCTGATGGGGAGGGAGGGATTATTGGCTCCTTGGCAGGCAATTGTCGGTTTTATAATGTATCAGAGAATCGCTTGCAAGTAGATTCCCAACTATGCTTAATTGGTAAGAAGAAAGTTCCTGGCAGAGGGATTACTGGGTTTCAGTTTCATCCACAAGATTCTAAGAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGATGGGCCTATTGTAATTGGCAAGTACAAAAGCCTTGGCACTGGGAGCCCAATGTGTGCATCATTTACTTCTGATGGGAAACATATTATATCAGCATGTGAGGATTCTAACGTATACCTATGGAATGTCAGTCAAGAGGAGTCCAATCCCATAAAAACTAAGAAGATTATGTCTTGTGAGCGGTTTTTCTCAAATGCATCTGTTGCAGTACCTTGGCAAGGCTTGAAATCTCAAAATATTGAAAACGAACGTCAATTGGATGTCTTGAATAAAGGCTCATCACAAGTTATGCATATCAATCCACCTGCTTCATTCTCTCTGAGCCAAGAATTTTTCTTGGAGTCTTTTCCCAAAGGATCTGCAACTTGGCCTGAGGAGAACCTTCCTGTTTCAAGCTCCAAGCCTAAAACATCAATGATTCAAAAATCCGATTACAAATTCTTGAAATCTTCTTGCAAGAGTACCGCCACTGGTCACGCGTGGGGTATGGTCATTGTCACTGCTGGTTGGGATGGTAGAATAAAATCATTCCATAATTATGGGTTACCTATACCCACTTGA 2061 0.4313 MGSFSEDEECRFFDAQEDVVVSIADEGVSKGFDYELWVRSPMSVRERRNTFRKRMGLGVDLVALANENCSVECEEVMDRVKVVEEEFCSTRSSMYSCHSERFSEGFGLVDNSPCQDGNLEGNVDQEGLQCREMSDGRDLDSDRLVDEQKSKDLENVFRQTDANAPSRRTSRDLKGWLRRLRSITCMVDREEGGDNEGEGLGEMSGCRLRKVKVRQSKKHMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKLSKLKSLKKTSDSACIVFPPKIFRLVEKPLQEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWHVNHDHCLKVFSHSNYVTCIQFNPVDDDYFISGSIDGKVRIWSIPDCHVVDWIDIKDIVTAVCYRPDGEGGIIGSLAGNCRFYNVSENRLQVDSQLCLIGKKKVPGRGITGFQFHPQDSKKVMVSCADSQVRILDGPIVIGKYKSLGTGSPMCASFTSDGKHIISACEDSNVYLWNVSQEESNPIKTKKIMSCERFFSNASVAVPWQGLKSQNIENERQLDVLNKGSSQVMHINPPASFSLSQEFFLESFPKGSATWPEENLPVSSSKPKTSMIQKSDYKFLKSSCKSTATGHAWGMVIVTAGWDGRIKSFHNYGLPIPT 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 265 - -
Cca03g00946 686 PRINTS G protein beta WD-40 repeat signature 251 265 IPR020472 -
Cca03g00946 686 PRINTS G protein beta WD-40 repeat signature 354 368 IPR020472 -
Cca03g00946 686 PRINTS G protein beta WD-40 repeat signature 396 410 IPR020472 -
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 376 IPR001680 GO:0005515
Cca03g00946 686 Gene3D - 468 678 IPR015943 GO:0005515
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 369 - -
Cca03g00946 686 SMART WD40_4 225 264 IPR001680 GO:0005515
Cca03g00946 686 SMART WD40_4 329 367 IPR001680 GO:0005515
Cca03g00946 686 SMART WD40_4 370 409 IPR001680 GO:0005515
Cca03g00946 686 SMART WD40_4 502 542 IPR001680 GO:0005515
Cca03g00946 686 SMART WD40_4 412 450 IPR001680 GO:0005515
Cca03g00946 686 SMART WD40_4 461 501 IPR001680 GO:0005515
Cca03g00946 686 Coils Coil 66 86 - -
Cca03g00946 686 SUPERFAMILY WD40 repeat-like 227 676 IPR036322 GO:0005515
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 265 IPR001680 GO:0005515
Cca03g00946 686 Pfam WD domain, G-beta repeat 233 263 IPR001680 GO:0005515
Cca03g00946 686 Pfam WD domain, G-beta repeat 331 366 IPR001680 GO:0005515
Cca03g00946 686 Pfam WD domain, G-beta repeat 373 409 IPR001680 GO:0005515
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 410 - -
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 410 IPR001680 GO:0005515
Cca03g00946 686 PANTHER WD REPEAT DOMAIN 44 6 685 IPR040324 -
Cca03g00946 686 Gene3D - 203 467 IPR015943 GO:0005515
Cca03g00946 686 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 551 IPR001680 GO:0005515
Cca03g00946 686 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00946 Cca-Chr3 23446293 23449389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00946 232 390 U-box Gene Family AT2G33340 23.529 9.78e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00946 - - gmx:100817209 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02243 09 47650297 47655007 Cca03g00946 03 23446293 23449389 PCT