Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00941 ATGGAGAACGAATTATTAGTTCGTGCCTCTCTTACCCCAGCGTGCGAGTTACTTTCCCGGACCATCTCTACTATATTTGACACCGTCAAAGCAGCTAATGAGGTTGTCATTCACAAGGAGAATTTTAAGAGTTTTTCTGTTCACTTGGAGAATATCTCATTTATGTTGAAGTCTTTAACAAAGGAAGACATACACAACCCTGGGAGCTTTGAAAATGCTATGAATGGTTTCAACCGAGAGATTCAAGTTGCTAAGCAGCTTTCTGTTGAGTGCAACAATAGAAGTAAGATTTATCTTTTAATCAATTCCAGAAAGATCATCACATGCTTGAATTGTTGTACCAAGGATATAGGTCGTGCAGTAAGCCTCATCCCTTTGGTCTCTTTAGACACGGGTTTAAATCGAAAGATAAGTGAGTTATGTCAGAAAATGTTAGATGCTGAGTATCAAACAGGTGCAGCTGGTGAGAAGATTTTAGAAAAGATTGAGACGGCAATACAAGAGGGAAATGTTGAAAGGTCGTATGTGAATCAGTTGCTAACCTGCATTGCAGACGCCATTGGGATCCCCATGGAGCATGGTGCTTTGAAGAGAGAATTTGAAGAGCTGAAAAATGAAATGGAAGCAGCCAAGTCAAGGGTAGATATGGCAGAAGCTTTACATATGGAGAAGATTGTTACAATGCTTGGAAAGGCTGATTATATAACTTCAGCACAAGAGAAGGAAACTAAGTATTTTGAAAAGAGAAATTCTTTGGGAGAGAGACCATTGGCGGCTCTGCAGTCTTTTTACTGTCCAATCTCTCTTGATATTATGGTTGATCCTGTGGAGACTTCCTCTGGGAAGACATTTGAGAGAAGTGCAATAGAGAAATGGTTTGCTGAAGGGAACACTCACTGTCCCTTGACCAGGTTGCCTCTGGATACTAAAATCCTAAGGCCAAATAAAACTCTTAAACAGTCTATTCAAGAATGGAAGGACAGGAACACAATAATTACCATTTCTACCATCAAATCCGAACTTGAAACAAATGAAGATGAGGGAGTGATTCAGTCCCTAGATAAACTTCATGACATATGCTTAGAAAGAGACGAGCACCGAGAATGGTTAAAAATGGAGAATTACATCACTGATCTTATTGGACTTCTTAGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTATGCTTGCAATGGATAATGCAGAGAACAAGGAAGATATTGCTAAAGTGGAGAACGCACTTGGATCTATTGTTCGTTCACTTTCACGTCAAGTTGAGGAACGCAAGTTAGCCTTGGAGTTGCTGTTGGAGTTGTCTAAAAGTAAAACGGTGTGCAGTCTCATAGGAAACATTCAAGGAAGCATACTTCTCCTGGTATCGATGTTAAATAGTGATGATGTTGAAGCATTCAAAAATGCACACGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCTGAAACTATCAACAGGACCAGAGAATATGAAAATAGTCATGACTGAAACTTTGTCCAAAATTACATTGACCGACCAGAATAAATTGTCCTTGGTCAAAGATGGGGCACTGCAACCACTTCTTCAGCTGCTCTTAAATAATGATTTGGAAATCAAGAAAGTTGCTGTCAAAGCTTTACTACAGCTCTCAAGCTTGCCAGAGAATGGCCTGCAGATGCTCAAGGAAGATGTTGCTCAACCACTGTTGGAACTTCTTTACTGTAGTTTACAGTTACCTACTCTGCTTGAACAAGTTGTTGCAACAATAATGCATCTTGCCATATCAACAACTCACCAACAAGCTGAAGCAGAACAGGTTTCATTGTTAGATTCTGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACAGAAGTTGAGATACAAAACAAGATTCTCAAAGCTTTCCAGGCATTGTGTCAATCTTTCTATGGCTTCCGCATCAGAAAGAGATTGAGACAGATCTCAGCCGCTAAGGTATTGGTCCTCTTGTTGGAGCTTAATACCCAAACAGTGCAGGTCAGTGCCTTGAAGCTTTTCTATTGCTTGACAGAAGATGGTGACTATGGCAACATCTCATCACATATTACTGAAAGATTCATTAAAGTCTTGCTTACCATCATTGAGGCTTCTAATGATGCAGAAGAGGTGGCTACTGCTATAGGTATCATCTCTAAACTACCACAGGAGTCTGAAATGACTTGGTGGCTTCTAGATTCCGGGGCACTTAAAACCATTTCGACTTGTCTTACCGATCAATACAAGCATGCCTCACACAAAAACCAAGTTGTAGAGAATTCTGTTCAAGCTCTTTTTCGTTTTACTGTCTCAACAAATCTGGAGTGGCAGAAGAGAGTGGCTTCGGAAGGCCTAATCCCAGTGCTGGTGCAATTGCTGCATTCTGGAACACCCTTTACCAAACAAAATGCAGCCATTTCAATCAAACAGTTTTCAGAAAGTTCTTACTGCTTGAGCGAGCCAATAAAGAAGCCTGGAATTTTCAAATGCTGCTTTGTAGCTCAAGAAAATGGTTGCCCAGCACACTTAGGCACCTGTTCAGTTGAGTCTTCATTCTGCATTGTGCAGGCTAATGCCTTGGAGCCCCTAGTGCGCATGCTTGCAGAAAAAGATGTTGAAACGCGCGAAGCCTCCTTAGATGCACTACTAACTTTGGTTGATAGCGAAGCACCACAGAGTGGAAGTAAGGTGCTTGCAAATTCAAATGCTATTGCACCAATGATACAACTATTGAGTGTTCAGGCTCCCAGGTTGCAGGAAAAAATTCTAATAGCTTTAGAACGAATCTTTCAACTAGATGAAGTGAGAAATAAATACAAATCTTTGGCCACGATGCCCTTTGTAGACATAACTCAGGGGAAAGATAGCCGTTTGAGAAGTCTCGCTGCCAAAGGCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 3015 0.406 MENELLVRASLTPACELLSRTISTIFDTVKAANEVVIHKENFKSFSVHLENISFMLKSLTKEDIHNPGSFENAMNGFNREIQVAKQLSVECNNRSKIYLLINSRKIITCLNCCTKDIGRAVSLIPLVSLDTGLNRKISELCQKMLDAEYQTGAAGEKILEKIETAIQEGNVERSYVNQLLTCIADAIGIPMEHGALKREFEELKNEMEAAKSRVDMAEALHMEKIVTMLGKADYITSAQEKETKYFEKRNSLGERPLAALQSFYCPISLDIMVDPVETSSGKTFERSAIEKWFAEGNTHCPLTRLPLDTKILRPNKTLKQSIQEWKDRNTIITISTIKSELETNEDEGVIQSLDKLHDICLERDEHREWLKMENYITDLIGLLSSKNREIRKRVLLILSMLAMDNAENKEDIAKVENALGSIVRSLSRQVEERKLALELLLELSKSKTVCSLIGNIQGSILLLVSMLNSDDVEAFKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENMKIVMTETLSKITLTDQNKLSLVKDGALQPLLQLLLNNDLEIKKVAVKALLQLSSLPENGLQMLKEDVAQPLLELLYCSLQLPTLLEQVVATIMHLAISTTHQQAEAEQVSLLDSEEDIFKFFSLISLTEVEIQNKILKAFQALCQSFYGFRIRKRLRQISAAKVLVLLLELNTQTVQVSALKLFYCLTEDGDYGNISSHITERFIKVLLTIIEASNDAEEVATAIGIISKLPQESEMTWWLLDSGALKTISTCLTDQYKHASHKNQVVENSVQALFRFTVSTNLEWQKRVASEGLIPVLVQLLHSGTPFTKQNAAISIKQFSESSYCLSEPIKKPGIFKCCFVAQENGCPAHLGTCSVESSFCIVQANALEPLVRMLAEKDVETREASLDALLTLVDSEAPQSGSKVLANSNAIAPMIQLLSVQAPRLQEKILIALERIFQLDEVRNKYKSLATMPFVDITQGKDSRLRSLAAKGLAQLGVLDKQSSYF 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00941 1004 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 582 IPR000225 GO:0005515
Cca03g00941 1004 Pfam MCAfunc domain 29 131 IPR045766 -
Cca03g00941 1004 SUPERFAMILY ARM repeat 781 998 IPR016024 -
Cca03g00941 1004 Gene3D - 860 996 IPR011989 -
Cca03g00941 1004 SUPERFAMILY ARM repeat 531 854 IPR016024 -
Cca03g00941 1004 Coils Coil 193 220 - -
Cca03g00941 1004 Pfam Armadillo/beta-catenin-like repeat 878 907 IPR000225 GO:0005515
Cca03g00941 1004 Pfam Armadillo/beta-catenin-like repeat 530 568 IPR000225 GO:0005515
Cca03g00941 1004 SUPERFAMILY ARM repeat 334 621 IPR016024 -
Cca03g00941 1004 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 333 IPR013083 -
Cca03g00941 1004 CDD RING-Ubox_PUB 263 304 IPR045210 -
Cca03g00941 1004 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Cca03g00941 1004 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Cca03g00941 1004 SMART arm_5 529 569 IPR000225 GO:0005515
Cca03g00941 1004 SMART arm_5 916 956 IPR000225 GO:0005515
Cca03g00941 1004 SMART arm_5 488 528 IPR000225 GO:0005515
Cca03g00941 1004 SMART arm_5 872 912 IPR000225 GO:0005515
Cca03g00941 1004 Gene3D - 334 661 IPR011989 -
Cca03g00941 1004 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1004 - -
Cca03g00941 1004 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Cca03g00941 1004 Gene3D - 664 855 IPR011989 -
Cca03g00941 1004 SUPERFAMILY RING/U-box 249 331 - -
Cca03g00941 1004 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00941 Cca-Chr3 23287498 23291571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00941 261 1004 U-box Gene Family AT1G76390 25.806 6.43e-54 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00941 - - gmx:100818273 1608.19