Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00933 ATGGGAGGTTCATCGGAGACGAAGTTCCTGCAAGACCTGTTGTTGTACGCGGCGAGCGCGGCGCTGAGTTGCTTGGTCTTGTTCGCGGGTCTCAGACACCTCGACCCTAATCGCGAAGCATCGAAGAAGCTTATCGAGCACAAGAAGGAGATTGCAAAACGTCTCGGTCGCCCCCTCATTCAGACAAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAATTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCGGACTTATTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCACCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAATCGGGAGCAGTTTTTATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCACAAAAACTCGTGGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGCATCAGATCATGAGGCTTTGTTAAGCATGAAAACTGAGTTCATGGCTCTTTGGGATGGATTTACCACAGATCAGAATGCTCGAGTTATGGTCCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCTTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGATTGAAGACAATATAGATTTTGGTCATATTGCTGGCTTGTGTGATGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATAAGAGAACTACTGGATGGAGAGAAGGAAGGAAAACGACCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCTATTGCCACTTCACAGAAGACAAAGGTTGCTGCAAATGAATACGGAGGATTCAGCCTTCAGTCACCTTCTAGATGGACAGCACCTGGTGAGTCAGAGTAA 1092 0.4505 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKLIEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRASDHEALLSMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVILKGERIEDNIDFGHIAGLCDGYTGSDLFDLCKKAAYFPIRELLDGEKEGKRPPAPRPLSQLDLEKAIATSQKTKVAANEYGGFSLQSPSRWTAPGESE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00933 363 CDD AAA 116 251 - -
Cca03g00933 363 MobiDBLite consensus disorder prediction 344 363 - -
Cca03g00933 363 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Cca03g00933 363 Gene3D - 80 337 IPR027417 -
Cca03g00933 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Cca03g00933 363 SMART AAA_5 118 254 IPR003593 -
Cca03g00933 363 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 3 341 - -
Cca03g00933 363 Pfam AAA+ lid domain 274 309 IPR041569 -
Cca03g00933 363 Gene3D - 253 333 - -
Cca03g00933 363 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 3 341 - -
Cca03g00933 363 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00933 Cca-Chr3 23108794 23113950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00933 39 318 Calmodulin-binding Proteins AT3G56690 32.042 2.31e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00933 K22530 - gmx:100796908 669.848