LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00927	ATGGATATCATGACTGCCTTACAACTTGTCCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCATGAAGCATTAAAAGTGATTGAGAAGCATGTTGCACAGTTCTGTGTTCTAGCAGAAGACTGTGACCAACCTGACTATGTTAAACTTGTTAAGGCCCTTTGCGCAGAGCACAATGTTAGCCTGTTGACGGTTCCTAGTGCAAAGACCCTTGGAGAATGGGCTAGTAAATGGCGGTAA	249	0.4498	MDIMTALQLVLRKSLAYGGLARGLHEALKVIEKHVAQFCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWASKWR	82

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g00927	82	ProSitePatterns	Ribosomal protein S12e signature.	6	24	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g00927	82	PANTHER	40S RIBOSOMAL PROTEIN S12	1	79	-	-
	Cca03g00927	82	Gene3D	-	1	81	IPR029064	-
	Cca03g00927	82	PANTHER	40S RIBOSOMAL PROTEIN S12	1	79	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g00927	82	PRINTS	Ribosomal protein S12E family signature	10	23	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g00927	82	PRINTS	Ribosomal protein S12E family signature	24	40	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g00927	82	PRINTS	Ribosomal protein S12E family signature	65	82	IPR000530	GO:0003735\|GO:0005840\|GO:0006412
	Cca03g00927	82	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	6	80	IPR004038	-
	Cca03g00927	82	SUPERFAMILY	L30e-like	1	80	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00927	Cca-Chr3	22958761	22959845	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g00927	1	78	Cytoplasmic Ribosomal Protein Gene Family	AT2G32060	75.641	1.32e-40	128

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00927	K02951		-	gmx:100499723	150.984