Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00920 ATGGGGATCCTTAGTGatcatcataatcaaaagcaccaccatcatcatcatcacatgagctttcatcttcacatcCCTCAACTCCACTTTCACCACCACCATGAGAAGAAGGACATGAAGGATGTTCCAAAAGGGTGTTTGGCGATCTTGGTGGGGCAAGGAGAGGAGCAACAGAGGTTTGTGATCCCTGTGATGTACATGAACCATCCACTCTTCATGCAGTTGCTCAAAGAAGCTGAAGATGAATACGGCTTCGATCAGAAAGGACCAATTACGATACCATGCTACGTGGAGCAGTTCCGCACCGTCCAAGGCATCATTGATAGGGAGAAGTGTCTCCACCATCATCATGCTTGGTGCTTTAAAGTTTGA 372 0.4032 MGILSDHHNQKHHHHHHHMSFHLHIPQLHFHHHHEKKDMKDVPKGCLAILVGQGEEQQRFVIPVMYMNHPLFMQLLKEAEDEYGFDQKGPITIPCYVEQFRTVQGIIDREKCLHHHHAWCFKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00920 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 20 117 IPR003676 GO:0009733
Cca03g00920 123 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 20 117 - -
Cca03g00920 123 Pfam Auxin responsive protein 34 103 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00920 Cca-Chr3 22795976 22797151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00920 41 101 Calmodulin-binding Proteins AT5G20810 57.377 8.54e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00920 K14488 - gmx:100526867 206.068