Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00913 ATGGCGGCTTCTTTGGGGTTTCCTTTCACAACTGCTCAATGGAGGGAGCTTGAAAGACAAGCCATGATTTACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCTGGTCTTCTCAATCTCATCCCCACTTCCACTTCTCGCTCTCCCTGCATGGACGGTGCTTTCAATCTGAGGCTGGCAAGTAGCAGTGACCCGGAGCCAGGTAGGTGCAGAAGAACAGATGGTAAAAAATGGAGATGCTCAAGAGATGTGGCTCCTAACCACAAATACTGCGAGCGCCATATGCATAGAGGCCGACCCCGTTCAAGAAAGCCTGTGGAAGTTCACACCAACACCCCCACTCCCACTAGcatcaacaacaacaataataacgaacaaATCAAAAGAGCTCGCCATGAGTCTATCCCTTCCCCTACACCTGATGTTGCCGTGGCTGTTTCTAACCCCACATCCAGAAAAGATGGATCTTCGCCCCATTTTCTTGCTTCTTCTACTACCACTCAGCCCTACCTTGAATCTTCCCTCTCTCTTGCTAACTTTGGTGTCAAATCTGCGAATTTTGACTCCGTGGCTCCTCTTTCTTCAAATAATAAGGAACCCAGgggtttggactggatgctgaatgGAGATCCGATTTCCCTGGGTGCTTCTGACTCAGAATGGCAGTCTCTGATACATAATAAAGTTGGAATGACAAGTGAGAGTTCCTGTAACACCACCGAGCCTCAGTATCTGAACTCATTTGCGTTATATAGCTCTGGAATGGATCAACACAACAGACGCCATCCTTTGTTCCTGAACCCTCTTGTTGTTCCCATGGAAAATCTCCAACAGGAGAAGCCAAGGGGTTTCATTGATGCTTGGTCCAACTCAGAAACAGGTGAAGGCAATGCCAACATCAACAAGAACTCTGCTGCATCAATTGGTAAACTATCCCTTTCTTCTCTTGATCTATCCATGGGGGGTGGTGCTGTGCATGAAGATATAGGTACTATTGAAATGGGTTTGGGCAACAAACACACTGATACTAAAAGCTCTCTCTCAAATTGGCTTAACCCAGCACCTTGGGTGGCTTCAACACCTGGTGGTCCTCTAGCTGAAGTTCTAAGATCAAGCACGGTCACAGCCACCAATGAAGCAGCCTCGACCACATCCTCACAAGCCACTACACATGTTGAATCCAATAGTCCTCTGGGGACAATGGTGTCATCTCCATCTGGGGTGTTGCAGAAAACGCTTGCTTCATTGTCTGATAGTAGTAGCAATAGCAGCCCAAGGGTTGCATCATCAAGGGCCAATTCTGAGATGGCCTTGCTCAGGTTTCAATCAAGTGTAAATTAA 1341 0.4564 MAASLGFPFTTAQWRELERQAMIYKYMMASVPVPPGLLNLIPTSTSRSPCMDGAFNLRLASSSDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVHTNTPTPTSINNNNNNEQIKRARHESIPSPTPDVAVAVSNPTSRKDGSSPHFLASSTTTQPYLESSLSLANFGVKSANFDSVAPLSSNNKEPRGLDWMLNGDPISLGASDSEWQSLIHNKVGMTSESSCNTTEPQYLNSFALYSSGMDQHNRRHPLFLNPLVVPMENLQQEKPRGFIDAWSNSETGEGNANINKNSAASIGKLSLSSLDLSMGGGAVHEDIGTIEMGLGNKHTDTKSSLSNWLNPAPWVASTPGGPLAEVLRSSTVTATNEAASTTSSQATTHVESNSPLGTMVSSPSGVLQKTLASLSDSSSNSSPRVASSRANSEMALLRFQSSVN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00913 446 MobiDBLite consensus disorder prediction 107 125 - -
Cca03g00913 446 MobiDBLite consensus disorder prediction 141 165 - -
Cca03g00913 446 Pfam WRC 65 107 IPR014977 -
Cca03g00913 446 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g00913 446 MobiDBLite consensus disorder prediction 413 432 - -
Cca03g00913 446 MobiDBLite consensus disorder prediction 96 165 - -
Cca03g00913 446 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g00913 446 PANTHER GROWTH-REGULATING FACTOR 7 2 433 - -
Cca03g00913 446 PANTHER - 2 433 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cca03g00913 446 ProSiteProfiles WRC domain profile. 64 108 IPR014977 -
Cca03g00913 446 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cca03g00913 446 MobiDBLite consensus disorder prediction 376 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00913 Cca-Chr3 22664250 22667398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00913 1 369 GRF Transcription Factor Family AT4G24150 32.984 1.20e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Cca03g00913 WRC 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00913 - - ccaj:109793637 810.061