Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00908 ATGTCACAGCCAAGGCAAAACAAgatgatgatgatgatgaGTCCAAACGTTGCCAAACAAGTTGGTGACACTACCTATACTAAGATCTTTGTCGGAGGACTGGCTTGGGAGACTAAGAGAGACACTCTGAAACGCTACTTTGATCAGTTTGGGGAGATCTTAGAGGCCGTTGTCATCACTGACAGAAACACTGGAAGATCAAAAGGATATGGCTTTGTAACCTTCAGGGACCCAAATTCTGCAATAAGAGCTTGTCAGAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAACTGTAATCTTGCAGCCCTTGGTGCACAGAAATTTGATCCATCTATAACAGGAAGGCAAAAATTCAGTAGCCCTTCATGGAATATGGCACCAATCTCATTTCAAGGCACCTCCACTTATTATAATCAACACATACCCCACTATCCATATCCCTATCCAGCCTACAGGTATCCTGGTTACCATCACCCACAAGACTTGTATGAAATGAACTACAATAATGTATATGGTGGACAACAGCTTCCACTACGATGGTTTCCAGCATATTGCCAACCCTTTTATGGCTTTAGTAGACAGTTCATTCCAACAGCATATGTGAAAAAGGCACAAATCCCTGACATGTCACCTCAGGAGTTCTCACTTGTTGGCTTCTCAGAACCTATTTCAGCTTCTCCTTCGATTTCCAGCGCTGGATTAGTCACAGGACAAGTACCTGCTGCAGGAGGGCTAGAATCCCCCCAAGAACAGAAATCTTCAACTTAA 771 0.428 MSQPRQNKMMMMMSPNVAKQVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNTGRSKGYGFVTFRDPNSAIRACQNPYPVIDGRRANCNLAALGAQKFDPSITGRQKFSSPSWNMAPISFQGTSTYYNQHIPHYPYPYPAYRYPGYHHPQDLYEMNYNNVYGGQQLPLRWFPAYCQPFYGFSRQFIPTAYVKKAQIPDMSPQEFSLVGFSEPISASPSISSAGLVTGQVPAAGGLESPQEQKSST 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00908 256 CDD RRM_RBM24_RBM38_like 27 102 - -
Cca03g00908 256 Gene3D - 1 114 IPR012677 -
Cca03g00908 256 PANTHER BOULE-RELATED 1 256 IPR037366 GO:0003729
Cca03g00908 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Cca03g00908 256 SMART rrm1_1 28 100 IPR000504 GO:0003723
Cca03g00908 256 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 256 - -
Cca03g00908 256 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Cca03g00908 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00908 Cca-Chr3 22528067 22530961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00908 23 196 C2H2 Transcription Factor Family AT2G19380 28.736 3.22e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00908 - - gmx:100788634 428.713