Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00907 ATGGCTGTTGCTGATAATGTTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTCGTGTCATCGGACTCAGGCGAGGTTGAGAAATCGAAACCTAGAACTGGGTCCATCAGCGGCGATCAGAAGCTGAACAACGGTGTATTCAACCACCAAGATAGAGTTCCTAGCACTATGACAGTGCCCAATAGCAATTATAACTACACGGTACAAATGGGTCAGATGCACTCAAATGGGGTGAACAATGATGGCTATGGGATGAATGGGGAGAGGAGTGGTGAGAATGGGAGTGAGAGTTTCAAGCGAGATATGAGGGATTTGGAGGAACTTTTGTCAAAGTTGAATCCCATGGCCGAGGAATTTGTGCCTCCATCATTAACCAATACTCATGGTTACCTAGCTGGACCTGGTGCTGGTGGTGCTGGGTTTGGTTACCCTAATAATTTTATATTGCTCAATAGTTTTGGTAATGCTAACGGTCAAACTAACAGAAGGAGGAAGAATGGCTATAATCATGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACCGAAGAGCAGCTGGCTGCGCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCTAATTCTATTCTTCGGTTTGCCTTTATTGAGTTTACAGATGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGCACCTGTTAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATCGATAAGAAGCTTACTCAAGCTGATGTCAAACACTTCTTTGAATCAATTTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACCCGAATTGCTTTTGTTGAGTTCACACTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGTAGTGGGGTGATTTTGGGTTCACTGCCCATAAGGGTAAGTCCATCAAAGACACCAGTTCGGTCGCGTGCTCCTCGTACTTCTATGCACTGA 1140 0.4421 MAVADNVGAKIGSSSQNLDNSVVSSDSGEVEKSKPRTGSISGDQKLNNGVFNHQDRVPSTMTVPNSNYNYTVQMGQMHSNGVNNDGYGMNGERSGENGSESFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGYLAGPGAGGAGFGYPNNFILLNSFGNANGQTNRRRKNGYNHGKRRVNHKIDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRTSMH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00907 379 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
Cca03g00907 379 SUPERFAMILY RNA-binding domain, RBD 282 373 IPR035979 GO:0003676
Cca03g00907 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 269 IPR000504 GO:0003723
Cca03g00907 379 MobiDBLite consensus disorder prediction 9 28 - -
Cca03g00907 379 Gene3D - 278 375 IPR012677 -
Cca03g00907 379 Gene3D - 156 271 IPR012677 -
Cca03g00907 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 367 IPR000504 GO:0003723
Cca03g00907 379 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 379 - -
Cca03g00907 379 MobiDBLite consensus disorder prediction 39 60 - -
Cca03g00907 379 MobiDBLite consensus disorder prediction 1 60 - -
Cca03g00907 379 SUPERFAMILY RNA-binding domain, RBD 166 271 IPR035979 GO:0003676
Cca03g00907 379 SMART rrm1_1 195 265 IPR000504 GO:0003723
Cca03g00907 379 SMART rrm1_1 292 363 IPR000504 GO:0003723
Cca03g00907 379 CDD RRM2_CID8_like 287 368 IPR034825 -
Cca03g00907 379 CDD RRM1_CID8_like 192 271 IPR034823 -
Cca03g00907 379 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 379 - -
Cca03g00907 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 360 IPR000504 GO:0003723
Cca03g00907 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00907 Cca-Chr3 22508144 22514053 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00907 193 362 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 1.46e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00907 - - gmx:106794116 706.442