LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00905	ATGGCTGTTGCTGAGAATGTTGGGCCCAAAATCGGTTCTTCCAGTCAGAATTTGGACCATGGTGTAGTGTCAGGAGATTCGAGTGAGGTTGAGAAATCAAAAACCAGAAACGATCAGAATCTGACCAACGGTGTATTCAACCATCAACAGCATCAAGAGAGAGTTCCTGGCACTATGTCAGTTCCTAACGGAAATTTCGGCTACAAAGCTCAGATGCACCCAAATGGAGTGAACAATGATGGGTATGGGATGAATGGGGTTATGAGTGACGAGAATGGGGGTGAGAGCTTCAAACGTGATATGAGGGATTTGGAAGAGCTTTTGTCTAAGTTAAATCCCATGGCTGAGGAATTTGTGCCTCCATCACTGGCCAATAATCATGGCTTCTTAGGTGGACCTAATACTGGATTTGGTTACCCTAACAATTTTATACTTCCTAATAACTTTGGAAATACTAATGGTCAAACTAACAATAGAAGGAGGAAGAATGGTTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATAGATATGGAGAAAAGGGAAGAGATGATTCGGCGGACCGTTTATGTGTCGGACATTGATCATCTGGTAACCGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGTCGTGTATGCGGAGATCCTAACTCAATTCTTCGATTTGCCTTCATTGAGTTTACTGATGAAGATGGTGCAAGGGCTGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTCAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAGTCTATCTGTGGAGAGGTTCACCGCTTGAGGCTTCTTGGGGATTACCACCATTCAACTCGAATTGCATTTGTTGAGTTCGCAATGGCTGAGAGTGCAATTGCAGCTCTGAGCTGTAGTGGTGTGATTTTGGGTTCACTGCCAATAAGGGTAAGTCCATCTAAGACACCAGTGCGACCTCGTGCTCCGCGTTCCGCCATGCACTGA	1119	0.4433	MAVAENVGPKIGSSSQNLDHGVVSGDSSEVEKSKTRNDQNLTNGVFNHQQHQERVPGTMSVPNGNFGYKAQMHPNGVNNDGYGMNGVMSDENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGFLGGPNTGFGYPNNFILPNNFGNTNGQTNNRRRKNGYNPGKRRVNHKIDMEKREEMIRRTVYVSDIDHLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFAMAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSAMH	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g00905	372	CDD	RRM1_CID8_like	185	264	IPR034823	-
	Cca03g00905	372	MobiDBLite	consensus disorder prediction	37	56	-	-
	Cca03g00905	372	MobiDBLite	consensus disorder prediction	9	23	-	-
	Cca03g00905	372	PANTHER	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE	1	372	-	-
	Cca03g00905	372	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	286	353	IPR000504	GO:0003723
	Cca03g00905	372	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	189	252	IPR000504	GO:0003723
	Cca03g00905	372	CDD	RRM2_CID8_like	280	361	IPR034825	-
	Cca03g00905	372	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	1	372	-	-
	Cca03g00905	372	MobiDBLite	consensus disorder prediction	1	56	-	-
	Cca03g00905	372	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	187	262	IPR000504	GO:0003723
	Cca03g00905	372	SUPERFAMILY	RNA-binding domain, RBD	158	264	IPR035979	GO:0003676
	Cca03g00905	372	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	284	360	IPR000504	GO:0003723
	Cca03g00905	372	SMART	rrm1_1	188	258	IPR000504	GO:0003723
	Cca03g00905	372	SMART	rrm1_1	285	356	IPR000504	GO:0003723
	Cca03g00905	372	MobiDBLite	consensus disorder prediction	149	170	-	-
	Cca03g00905	372	SUPERFAMILY	RNA-binding domain, RBD	275	366	IPR035979	GO:0003676
	Cca03g00905	372	Gene3D	-	271	367	IPR012677	-
	Cca03g00905	372	Gene3D	-	149	264	IPR012677	-
	Cca03g00905	372	Pfam	Ataxin-2 C-terminal region	108	122	IPR009818	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00905	Cca-Chr3	22417360	22424293	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g00905	186	348	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.150	6.00e-10	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00905	-		-	gmx:100800126	675.626