Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00904 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTCGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGTGGTCGAGATGGATACAATTTTGATGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATAtggaggaggaggtggtggtggtggtggcggcggcggtggtggtggCCGTTTTGGCATCTCACGCCATTCGGAGTATCGAGTTATTGTTCGTGGACTCCCTTCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGAAAATTGGATGACACTGAGTTTAGAAACCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAATATGAGAGTAGTCGTTCTaggagccgcagcagaagccccagcaggagcagaagTCCAAAAAGGGTTAGAAGTAGATCTTTGGATCGTTCTGTGTCTAGGTCACGATCTAGATCACGATCAGCATCACCAATCAAATCTTCCAGGCCAAGGTCACGTTCACGATCTGGTTCTCCTCGCCAGGTTCTGTCAGGTAGTGGTTGA 783 0.3972 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGGGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRVRSRSLDRSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00904 260 Gene3D - 118 196 IPR012677 -
Cca03g00904 260 MobiDBLite consensus disorder prediction 81 110 - -
Cca03g00904 260 CDD RRM1_SF2_plant_like 8 79 - -
Cca03g00904 260 MobiDBLite consensus disorder prediction 196 260 - -
Cca03g00904 260 SUPERFAMILY RNA-binding domain, RBD 6 189 IPR035979 GO:0003676
Cca03g00904 260 MobiDBLite consensus disorder prediction 215 229 - -
Cca03g00904 260 Gene3D - 2 117 IPR012677 -
Cca03g00904 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 183 IPR000504 GO:0003723
Cca03g00904 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Cca03g00904 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Cca03g00904 260 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 257 - -
Cca03g00904 260 SMART rrm1_1 120 189 IPR000504 GO:0003723
Cca03g00904 260 SMART rrm1_1 8 78 IPR000504 GO:0003723
Cca03g00904 260 MobiDBLite consensus disorder prediction 230 260 - -
Cca03g00904 260 CDD RRM2_SF2_plant_like 119 194 - -
Cca03g00904 260 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 257 - -
Cca03g00904 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00904 Cca-Chr3 22380716 22384751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00904 6 203 Eukaryotic Initiation Factors Gene Family AT4G34110 21.359 3.07e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00904 K12890 - gmx:100800653 372.089