Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00900 ATGGATTCTGGCGTGCAGAGTTGCAGCTTAGCCGTGTTAATTCTCCATGATGACGAAATCCCCATCACTGCCGAGAAGATCAACGCTTTGTTGAAGGCCGCTAATGTCTCCGTCGAGTCTTACTGGCCCAGTCTCTTTGCCAAGCTTGCCCAAAGTAAGAACATTGAAGACCTCGTTTTGAACGCCGGTGGTGCCGGTGCCGCCGCCGCCCCCGCCGTTGAGGAAAAGAAGGAAGAGGTGAAGGAAGAAAGTGATGATGACATGGGATTTGGCTTGTTTGATTAG 285 0.5158 MDSGVQSCSLAVLILHDDEIPITAEKINALLKAANVSVESYWPSLFAKLAQSKNIEDLVLNAGGAGAAAAPAVEEKKEEVKEESDDDMGFGLFD 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00900 94 MobiDBLite consensus disorder prediction 72 88 - -
Cca03g00900 94 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 67 - -
Cca03g00900 94 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 62 94 - -
Cca03g00900 94 CDD Ribosomal_P1 6 93 - -
Cca03g00900 94 Pfam 60s Acidic ribosomal protein 22 93 - -
Cca03g00900 94 MobiDBLite consensus disorder prediction 66 94 - -
Cca03g00900 94 Gene3D - 4 63 IPR038716 -
Cca03g00900 94 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 67 - -
Cca03g00900 94 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 62 94 - -
Cca03g00900 94 Hamap 50S ribosomal protein L12 [rpl12]. 6 94 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00900 Cca-Chr3 22358457 22359936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00900 1 94 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 55.856 1.86e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00900 K02942 - gmx:100785976 130.183